Author count: 12
Bornet E., Prezza G., Cecchino L., Jenniches L., Behrends J., Tawk C., Huang K.C., Strowig T., Vogel J., Barquist L., ... , Saliba A.E., Westermann A.J.
(2025)
Low-input RNA-seq suggests metabolic specialization underlying morphological heterogeneity in a gut commensal bacterium
Cell Rep.,
44
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Author count: 4
Danti G., Popella L., Vogel J., Maric H.M.
(2025)
High-Throughput Tiling of Essential mRNAs Increases Potency of Antisense Antibiotics
Advanced Science
Author count: 6
Homberger C., Imdahl F., Hayward R.J., Barquist L., Saliba A.E., Vogel J.
(2025)
Correction to: Transcriptomic profiling of individual bacteria by MATQ-seq (Nature Protocols, (2025), 10.1038/s41596-025-01157-5)
Nature Protocols
Author count: 7
Cosi V., Jung J., Popella L., Ponath F., Ghosh C., ... , Barquist L., Vogel J.
(2025)
An antisense oligomer conjugate with unpredicted bactericidal activity against Fusobacterium nucleatum
MBio.
Author count: 6
Homberger C., Imdahl F., Hayward R.J., Barquist L., Saliba A.E., Vogel J.
(2025)
Transcriptomic profiling of individual bacteria by MATQ-seq
Nature Protocols
Author count: 4
Sarkar P., Popella L., Perez-Jimenez S., Vogel J.
(2025)
RNA toehold switch-based reporter assay to assess bacterial uptake of antisense oligomers
MBio.
Author count: 12
Wannasrichan W., Krobthong S., Morgan C.J., Armbruster E.G., Gerovac M., Yingchutrakul Y., Wongtrakoongate P., Vogel J., Aonbangkhen C., Nonejuie P., ... , Pogliano J., Chaikeeratisak V.
(2025)
A ribosome-interacting jumbophage protein associates with the phage nucleus to facilitate efficient propagation
PLoS Pathogens,
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Author count: 6
Vogel J., Faber F., Barquist L., Sparmann A., Popella L., Ghosh C.
(2025)
Meeting report ASOBIOTICS 2024: an interdisciplinary symposium on antisense-based programmable RNA antibiotics
RNA
Author count: 4
Venturini E., Bischler T., Becher D., Vogel J.
(2025)
Functional characterization of the DUF1127-containing small protein YjiS of Salmonella Typhimurium
microLife,
6
Author count: 8
el Mouali Y., Tawk C., Huang K.D., Amend L., Lesker T.R., Ponath F., ... , Vogel J., Strowig T.
(2024)
The RNA landscape of the human commensal Segatella copri reveals a small RNA essential for gut colonization
Cell Host.Microbe
Author count: 6
BANDYRA K.J., Fröhlich K.S., Vogel J., Rodnina M., Goyal A., Luisi B.F.
(2024)
Cooperation of regulatory RNA and the RNA degradosome in transcript surveillance
Nucleic Acids Res.
Author count: 6
Putzeys L., Wicke L., Boon M., van Noort V., Vogel J., Lavigne R.
(2024)
Refining the transcriptional landscapes for distinct clades of virulent phages infecting Pseudomonas aeruginosa
microLife,
5
Author count: 2
Vogel J., de Lorenzo V.
(2023)
EAM highlights in FEMS 2023: From the Petri dish to planet Earth
microLife,
4
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Author count: 5
Cossart P., Hacker J., Holden D.H., Normark S., Vogel J.
(2024)
Meeting report 'Microbiology 2023: from single cell to microbiome and host', an international interacademy conference in Würzburg
Microlife.,
5
Author count: 3
Ponath F., Zhu Y., Vogel J.
(2024)
Transcriptome fine-mapping in Fusobacterium nucleatum reveals FoxJ, a new s(
MBio.
Author count: 7
Jenniches L., Michaux C., Popella L., Reichardt S., Vogel J., ... , Westermann A.J., Barquist L.
(2024)
Improved RNA stability estimation through Bayesian modeling reveals most Salmonella transcripts have subminute half-lives
Proc Natl Acad Sci U S A,
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Author count: 6
Gerovac M., Chihara K., Wicke L., B+Âttcher B., Lavigne R., Vogel J.
(2024)
Phage proteins target and co-opt host ribosomes immediately upon infection
Nat.Microbiol.,
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Author count: 8
Ghosh C., Popella L., Dhamodharan V., Jung J., Dietzsch J., Barquist L., ... , Höbartner C., Vogel J.
(2024)
A side-by-side comparison of peptide-delivered antisense antibiotics employing different nucleotide mimics
RNA.
Author count: 4
Zhu Y., Ponath F., Cosi V., Vogel J.
(2024)
A global survey of small RNA interactors identifies KhpA and KhpB as major RNA-binding proteins in Fusobacterium nucleatum
Nucleic Acids Res.
Author count: 9
Putzeys L., Wicke L., Brandao A., Boon M., Pires D.P., Azeredo J., Vogel J., ... , Lavigne R., Gerovac M.
(2024)
Exploring the transcriptional landscape of phage-host interactions using novel high-throughput approaches
Current Opinion in Microbiology,
77
Author count: 8
McQuail J., Matera G., Gräfenhan T., Bischler T., Haberkant P., Stein F., ... , Vogel J., Wigneshweraraj S.
(2023)
Global Hfq-mediated RNA interactome of nitrogen starved Escherichia coli uncovers a conserved post-transcriptional regulatory axis required for optimal growth recovery
Nucleic Acids Res.
Author count: 19
McFleder R.L., Makhotkina A., Groh J., Keber U., Imdahl F., Pena Mosca J., Peteranderl A., Wu J., Tabuchi S., Hoffmann J., Karl A.K., Pagenstecher A., Vogel J., Beilhack A., Koprich J.B., Brotchie J.M., Saliba A.E., ... , Volkmann J., Ip C.W.
(2023)
Brain-to-gut trafficking of alpha-synuclein by CD11c+ cells in a mouse model of Parkinson's disease
Nat.Commun.,
14
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Author count: 5
Okuda T., Lenz A.K., Seitz F., Vogel J., Höbartner C.
(2023)
A SAM analogue-utilizing ribozyme for site-specific RNA alkylation in living cells
Nat.Chem.
Author count: 2
Sparmann A., Vogel J.
(2023)
RNA-based medicine: from molecular mechanisms to therapy
EMBO J.
Author count: 5
Michaux C., Gerovac M., Hansen E.E., Barquist L., Vogel J.
(2022)
Grad-seq analysis of Enterococcus faecalis and Enterococcus faecium provides a global view of RNA and protein complexes in these two opportunistic pathogens
Microlife.,
4
Author count: 3
Homberger C., Barquist L., Vogel J.
(2022)
Ushering in a new era of single-cell transcriptomics in bacteria
Microlife.,
3
Author count: 7
Hankir M.K., Kovatcheva-Datchary P., Springer R., Hoffmann A., Vogel J., ... , Seyfried F., Arora T.
(2023)
Gut Microbiota Contribution to Weight-Independent Glycemic Improvements after Gastric Bypass Surgery
Microbiol.Spectr.
Author count: 4
Homberger C., Hayward R.J., Barquist L., Vogel J.
(2023)
Improved Bacterial Single-Cell RNA-Seq through Automated MATQ-Seq and Cas9-Based Removal of rRNA Reads
MBio.
Author count: 12
Däullary T., Imdahl F., Dietrich O., Hepp L., Krammer T., Fey C., Neuhaus W., Metzger M., Vogel J., Westermann A.J., ... , Saliba A.E., Zdzieblo D.
(2023)
A primary cell-based in vitro model of the human small intestine reveals host olfactomedin 4 induction in response to Salmonella Typhimurium infection
Gut Microbes,
15
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Author count: 20
Leipold A.M., Werner R.A., Düll J., Jung P., John M., Stanojkovska E., Zhou X., Hornburger H., Ruckdeschel A., Dietrich O., Imdahl F., Krammer T., Knop S., Rosenwald A., Buck A., Sander L.E., Einsele H., Kortüm K.M., ... , Saliba A.E., Rasche L.
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Th17.1 cell driven sarcoidosis-like inflammation after anti-BCMA CAR T cells in multiple myeloma
Leukemia
Author count: 8
Fernández Villalobos N.V., Kessel B., Torres Páez J.C., Strömpl J., Kerrinnes T., de la Hoz Restrepo F.P., ... , Strengert M., Krause G.
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Seroprevalence of Hepatitis E virus in children and adolescents living in urban Bogota: An explorative cross-sectional study
Front.Public Health,
11
Author count: 9
Jiao C., Reckstadt C., König F., Homberger C., Yu J., Vogel J., Westermann A.J., ... , Sharma C.M., Beisel C.L.
(2023)
RNA recording in single bacterial cells using reprogrammed tracrRNAs
Nat.Biotechnol.
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Homberger C., Saliba A.-E., Vogel J.
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A MATQ-seq-Based Protocol for Single-Cell RNA-seq in Bacteria
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Chihara K., Gerovac M., Hör J., Vogel J.
(2022)
Global profiling of the RNA and protein complexes of Escherichia coli by size exclusion chromatography followed by RNA sequencing and mass spectrometry (SEC-seq)
RNA.
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Hassenstein M.J., Janzen I., Krause G., Harries M., Melhorn V., Kerrinnes T., ... , Kemmling Y., Castell S.
(2022)
Seroepidemiology of Borrelia burgdorferi s.l. among German National Cohort (NAKO) Participants, Hanover
Microorganisms.,
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Raschig M., Ramírez-Zavala B., Wiest J., Saedtler M., Gutmann M., Holzgrabe U., ... , Morschhäuser J., Meinel L.
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Azobenzene derivatives with activity against drug-resistant Candida albicans and Candida auris
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Author count: 15
Dischinger U., Kötzner L., Kovatcheva-Datchary P., Kleinschmidt H., Haas C., Perez J., Presek C., Koschker A.C., Miras A.D., Hankir M.K., Vogel J., Germer C.T., Fassnacht M., ... , Herrmann M.J., Seyfried F.
(2023)
Hypothalamic integrity is necessary for sustained weight loss after bariatric surgery: A prospective, cross-sectional study
Metab.Clin.Exp.,
138
(Jan. 2023)
Author count: 6
Schneider C., Erhard F., Binotti B., Buchberger A., Vogel J., Fischer U.
(2022)
An unusual mode of baseline translation adjusts cellular protein synthesis capacity to metabolic needs
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Hör J., Jung J., Durica-Mitic S., Barquist L., Vogel J.
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INRI-seq enables global cell-free analysis of translation initiation and off-target effects of antisense inhibitors
Nucleic Acids Res.
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Ponath F., Zhu Y., Cosi V., Vogel J.
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Expanding the genetic toolkit helps dissect a global stress response in the early-branching species Fusobacterium nucleatum
Proc.Natl.Acad.Sci.U.S.A,
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Hauptstein N., Dirauf M., Wittwer K., Cinar G., Siering O., Raschig M., hmann T., Scherf-Clavel O., Sawatsky B., Nischang I., Schubert U.S., ... , Pfaller C.K., Meinel L.
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PEtOxylated Interferon-a2a Bioconjugates Addressing H1N1 Influenza A Virus Infection
Biomacromolecules
Author count: 16
Schuster E.M., Epple M.W., Glaser K.M., Mihlan M., Lucht K., Zimmermann J.A., Bremser A., Polyzou A., Obier N., Cabezas-Wallscheid N., Trompouki E., Ballabio A., Vogel J., Buescher J.M., ... , Westermann A.J., Rambold A.S.
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TFEB induces mitochondrial itaconate synthesis to suppress bacterial growth in macrophages
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Predicting Bile and Lipid Interaction for Drug Substances
Mol.Pharm.,
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Bile and excipient interactions directing drug pharmacokinetics in rats
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Regional seropositivity for Borrelia burgdorferi and associated risk factors: findings from the Rhineland Study, Germany
Parasites Vectors,
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Yair Y., Michaux C., Biran D., Bernhard J., Vogel J., ... , Barquist L., Ron E.Z.
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Cellular RNA Targets of Cold Shock Proteins CspC and CspE and Their Importance for Serum Resistance in Septicemic Escherichia coli
mSystems.
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Hauptstein N., Pouyan P., Wittwer K., Cinar G., Scherf-Clavel O., Raschig M., Licha K., Lühmann T., Nischang I., Schubert U.S., Pfaller C.K., ... , Haag R., Meinel L.
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Hyaluronic acid-GPRC5C signalling promotes dormancy in haematopoietic stem cells
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Comprehensive analysis of PNA-based antisense antibiotics targeting various essential genes in uropathogenic Escherichia coli
Nucleic Acids Res.,
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Cytoplasmic gene expression: lessons from poxviruses
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Selective inhibition of miRNA processing by a herpesvirus-encoded miRNA
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Beudert M., Hahn L., Horn A.H.C., Hauptstein N., Sticht H., Meinel L., Luxenhofer R., ... , Gutmann M., Lühmann T.
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Merging bioresponsive release of insulin-like growth factor I with 3D printable thermogelling hydrogels
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Beudert M., Gutmann M., Lühmann T., Meinel L.
(2022)
Fibrin Sealants: Challenges and Solutions
ACS Biomater.Sci.Eng
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Nusser A., Sagar, Swann J.B., Krauth B., Diekhoff D., Calderon L., Happe C., ... , Grün D, Boehm T.
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Developmental dynamics of two bipotent thymic epithelial progenitor types
Nature,
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An overview of gene regulation in bacteria by small RNAs derived from mRNA 3' ends
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The DNA polymerase of bacteriophage YerA41 replicates its T-modified DNA in a primer-independent manner
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Comparative Magnitude and Persistence of Humoral SARS-CoV-2 Vaccination Responses in the Adult Population in Germany
Front.Immunol.,
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A generic protocol for the affinity-purification of native macromolecular complexes from poxvirus-infected cells
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Halloy F., Biscans A., Bujold K.E., Debacker A., Hill A.C., Lacroix A., Luige O., Strömberg R., Sundstrom L., ... , Vogel J., Ghidini A.
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Innovative developments and emerging technologies in RNA therapeutics
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Bioconjugation strategies and clinical implications of Interferon-bioconjugates
Eur.J.Pharm.Biopharm.,
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Matera G., Altuvia Y., Gerovac M., el Mouali Y., Margalit H., Vogel J.
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Global RNA interactome of Salmonella discovers a 5' UTR sponge for the MicF small RNA that connects membrane permeability to transport capacity
Mol.Cell,
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Chemo-Enzymatic PEGylation/POxylation of Murine Interleukin-4
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Impact of pseudouridylation, substrate fold, and degradosome organization on the endonuclease activity of RNase E
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Antimicrobial Resistance Profiles of Coagulase-Negative Staphylococci in Community-Based Healthy Individuals in Germany
Front Public Health,
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Ponath F., Tawk C., Zhu Y., Barquist L., Faber F., Vogel J.
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RNA landscape of the emerging cancer-associated microbe Fusobacterium nucleatum
Nat.Microbiol.,
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Fuchs M., Lamm-Schmidt V., Sulzer J., Ponath F., Jenniches L., Kirk J.A., Fagan R.P., Barquist L., ... , Vogel J., Faber F.
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An RNA-centric global view of Clostridioides difficile reveals broad activity of Hfq in a clinically important gram-positive bacterium
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In vivo targets of Salmonella FinO include a FinP-like small RNA controlling copy number of a cohabitating plasmid
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The World of Stable Ribonucleoproteins and Its Mapping With Grad-Seq and Related Approaches
Front.Mol.Biosci.,
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Analysis of the RNA and Protein Complexome by Grad-seq
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Longitudinal Multi-omics Analyses Identify Responses of Megakaryocytes, Erythroid Cells, and Plasmablasts as Hallmarks of Severe COVID-19
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RNA.Biol.
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Global RNA profiles show target selectivity and physiological effects of peptide-delivered antisense antibiotics
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Mechanism and consequences of herpes simplex virus 1-mediated regulation of host mRNA alternative polyadenylation
PLoS Genet.,
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Taskin M.B., Ahmad T., Wistlich L., Meinel L., Schmitz M., ... , Rossi A., Groll J.
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Bioactive Electrospun Fibers: Fabrication Strategies and a Critical Review of Surface-Sensitive Characterization and Quantification
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Author Correction: Reprogramming of host glutamine metabolism during Chlamydia trachomatis infection and its key role in peptidoglycan synthesis
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MAPS integrates regulation of actin-targeting effector SteC into the virulence control network of Salmonella small RNA PinT
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A Grad-seq View of RNA and Protein Complexes in Pseudomonas aeruginosa under Standard and Bacteriophage Predation Conditions
MBio.,
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Drug-Induced Dynamics of Bile Colloids
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Opposing Wnt signals regulate cervical squamocolumnar homeostasis and emergence of metaplasia
Nat.Cell Biol.,
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Bernhardt L., Dittrich M., El-Merahbi R., Saliba A.E., Müller T., Sumara G., Vogel J., Nichols-Burns S., Mitchell M., ... , Haaf T., El Hajj N.
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A genome-wide transcriptomic analysis of embryos fathered by obese males in a murine model of diet-induced obesity
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A global data-driven census of Salmonella small proteins and their potential functions in bacterial virulence
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The SARS-CoV-2 RNA-protein interactome in infected human cells
Nat.Microbiol.,
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Single-Nucleotide RNA Maps for the Two Major Nosocomial Pathogens Enterococcus faecalis and Enterococcus faecium
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Intracellular Staphylococcus aureus Perturbs the Host Cell Ca(2+) Homeostasis To Promote Cell Death
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Triple RNA-Seq Reveals Synergy in a Human Virus-Fungus Co-infection Model
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Dissecting Herpes Simplex Virus 1-Induced Host Shutoff at the RNA Level
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Advances and challenges in single-cell RNA-seq of microbial communities
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Global discovery of bacterial RNA-binding proteins by RNase-sensitive gradient profiles reports a new FinO domain protein
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Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell Compartment
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Reprogramming of host glutamine metabolism during Chlamydia trachomatis infection and its key role in peptidoglycan synthesis
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Antibacterial Anacardic Acid Derivatives
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Targeting interleukin-4 to the arthritic joint
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Seropositivity for pathogens associated with chronic infections is a risk factor for all-cause mortality in the elderly: findings from the Memory and Morbidity in Augsburg Elderly (MEMO) Study
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Dual RNA-seq of Orientia tsutsugamushi informs on host-pathogen interactions for this neglected intracellular human pathogen
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Breast cancer colonization by Fusobacterium nucleatum accelerates tumor growth and metastatic progression
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The minimal meningococcal ProQ protein has an intrinsic capacity for structure-based global RNA recognition
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Increasing storage stability of freeze-dried plasma using trehalose
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Integrative functional genomics decodes herpes simplex virus 1
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An RNA biology perspective on species-specific programmable RNA antibiotics
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An advanced human intestinal coculture model reveals compartmentalized host and pathogen strategies during Salmonella infection
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An RNA Surprise in Bacterial Effector Mechanisms
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Regulatory RNAs in Virulence and Host-Microbe Interactions
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Salmonella persisters undermine host immune defenses during antibiotic treatment
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Genome organization and DNA accessibility control antigenic variation in trypanosomes
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