Cellular Proteome Research

Pathogenic bacteria, viruses and fungi utilize and alter physiological cellular processes of the infected host. Our studies focus on the identification of unknown processes in complex and molecular networks, which are involved in infectious diseases.

Publications

  • Grigull,L.; Lechner,W.; Petri,S.; Kollewe,K.; Dengler,R.; Mehmecke,S.; Schumacher,U.; Lucke,T.; Schneider-Gold,C.; Kohler,C.; Guttsches,A.K.; Kortum,X.; Klawonn,F.; (2016). Diagnostic support for selected neuromuscular diseases using answer-pattern recognition and data mining techniques: a proof of concept multicenter prospective trial. 16 1, 31 PubMed
  • Thumfart,J.O.; Abidi,N.; Mindt,S.; Costina,V.; Hofheinz,R.; Klawonn,F.; Neumaier,M.; Findeisen,P.; (2016). LC/MS based monitoring of endogenous decay markers for quality assessment of serum specimens. J Proteomics Bioinform: 8 5, 091-097 DOI: 10.4172/jpb.1000356 HZI repository PubMed
  • Seeger,B.; Klawonn,F.; Nguema,Bekale B.; Steinberg,P.; (2016). Mixture Effects of Estrogenic Pesticides at the Human Estrogen Receptor alpha and beta. PLoS ONE: 11 1, e0147490 PubMed
  • Borrero-de Acuna,J.M.; Rohde,M.; Wissing,J.; Jansch,L.; Schobert,M.; Molinari,G.; Timmis,K.N.; Jahn,M.; Jahn,D.; (2016). The Protein Network of the Pseudomonas aeruginosa Denitrification Apparatus. DOI: 10.1128/JB.00055-16 HZI repository PubMed
  • Lee,C.; Wigren,E.; Trcek,J.; Peters,V.; Kim,J.; Hasni,M.S.; Nimtz,M.; Lindqvist,Y.; Park,C.; Curth,U.; Lünsdorf,H.; Römling,U.; (2015). A novel protein quality control mechanism contributes to heat shock resistance of world-wide distributed Pseudomonas aeruginosa clone C strains. Environmental Microbiology: 17, 4511-4526 PubMed
  • Borrero-de Acuna,J.M.; Molinari,G.; Rohde,M.; Dammeyer,T.; Wissing,J.; Jänsch,L.; Arias,S.; Jahn,M.; Schobert,M.; Timmis,K.N.; Jahn,D.; (2015). A periplasmic complex of the nitrite reductase NirS, the chaperone DnaK, and the flagellum protein FliC is essential for flagellum assembly and motility in Pseudomonas aeruginosa. Journal of Bacteriology: 197 19, 3066-307500219193 DOI: 10.1128/JB.00415-15 HZI repository PubMed
  • Duvel,J.; Bense,S.; Moller,S.; Bertinetti,D.; Schwede,F.; Morr,M.; Eckweiler,D.; Genieser,H.G.; Jänsch,L.; Herberg,F.W.; Frank,R.; Häußler,S.; (2015). Application of synthetic peptide arrays to uncover c-di-GMP binding motifs. 198, 138-146 PubMed
  • Rother,A.K.; Schwerk,N.; Brinkmann,F.; Klawonn,F.; Lechner,W.; Grigull,L.; (2015). Diagnostic Support for Selected Paediatric Pulmonary Diseases Using Answer-Pattern Recognition in Questionnaires Based on Combined Data Mining Applications-A Monocentric Observational Pilot Study. PLoS ONE: 10 8, e0135180 PubMed
  • Ringel,P.; Probst,C.; Dammeyer,T.; Buchmeier,S.; Jänsch,L.; Wissing,J.; Tinnefeld,P.; Mendel,R.R.; Jockusch,B.M.; Kruse,T.; (2015). Enzymatic characterization of recombinant nitrate reductase expressed and purified from Neurospora crassa. Fungal Genetics and Biology: 80, 10-18 PubMed
  • Klawonn,F.; Kruse,R.; Winkler,R.; (2015). Fuzzy clustering: More than just fuzzification. 281, 272-27901650114 DOI: 10.1016/j.fss.2015.06.024 HZI repository PubMed
  • Preusse,M.; Schughart,K.; Wilk,E.; Klawonn,F.; Pessler,F.; (2015). Hematological parameters in the early phase of influenza A virus infection in differentially susceptible inbred mouse strains. 8, 225 DOI: 10.1186/s13104-015-1195-8 HZI repository PubMed
  • Szafranski,S.P.; Wos-Oxley,M.L.; Vilchez-Vargas,R.; Jauregui,R.; Plumeier,I.; Klawonn,F.; Tomasch,J.; Meisinger,C.; Kühnisch,J.; Sztajer,H.; Pieper,D.H.; Wagner-Döbler,I.; (2015). High-resolution taxonomic profiling of the subgingival microbiome for biomarker discovery and periodontitis diagnosis. 81 3, 1047-105800992240 DOI: 10.1128/AEM.03534-14 HZI repository PubMed
  • Wirsing,L.; Klawonn,F.; Sassen,W.A.; Lünsdorf,H.; Probst,C.; Hust,M.; Mendel,R.R.; Kruse,T.; Jänsch,L.; (2015). Linear Discriminant Analysis Identifies Mitochondrially Localized Proteins in Neurospora crassa. 14 9, 3900-3911 PubMed
  • Worthmann,H.; Tryc,A.B.; Dirks,M.; Schuppner,R.; Brand,K.; Klawonn,F.; Lichtinghagen,R.; Weissenborn,K.; (2015). Lipopolysaccharide binding protein, interleukin-10, interleukin-6 and C-reactive protein blood levels in acute ischemic stroke patients with post-stroke infection. 12 117422094 DOI: 10.1186/s12974-014-0231-2 HZI repository PubMed
  • Lanfermann,I.; Linke,D.; Nimtz,M.; Berger,R.G.; (2015). Manganese Peroxidases from Ganoderma applanatum Degrade beta-Carotene Under Alkaline Conditions. 175 8, 3800-3812 PubMed
  • Novoselova,N.; Wang,J.; Klawonn,F.; (2015). Optimized leaf ordering with class labels for hierarchical clustering. 13 4, Article number 155001202197200 WEBURLS
  • Schweitzer,A.; Della,Beffa C.; Akmatov,M.K.; Narchi,H.; Abaev,Y.K.; Sherry,D.D.; Pessler,F.; (2015). Primary Osteomyelitis of the Sternum in the Pediatric Age Group: Report of a New Case and Comprehensive Analysis of Seventy-four Cases. 34 4, e92-e101 PubMed
  • Winkler,R.; Klawonn,F.; Kruse,R.; (2015). Prototype based fuzzy clustering algorithms in high-dimendional features spaces. Studies in Fuzzines and Soft Computing: 322, 233-243
  • Rand,U.; Riedel,J.; Hillebrand,U.; Shin,D.; Willenberg,S.; Behme,S.; Klawonn,F.; Köster,M.; Hauser,H.; Wirth,D.; (2015). Single-cell analysis reveals heterogeneity in onset of transgene expression from synthetic tetracycline-dependent promoters. 10 2, 323-33118606768 WEBURLS
  • Seeger,B.; Klawonn,F.; Bekale,B.N.; Steinberg,P.; (2015). The ability of the YAS and AR CALUX assays to detect the additive effects of anti-androgenic fungicide mixtures. 241, 193-199 PubMed
  • Castelle,C.J.; Roger,M.; Bauzan,M.; Brugna,M.; Lignon,S.; Nimtz,M.; Golyshina,O.V.; Giudici-Orticoni,M.T.; Guiral,M.; (2015). The aerobic respiratory chain of the acidophilic archaeon Ferroplasma acidiphilum: A membrane-bound complex oxidizing ferrous iron. 1847 8, 717-728 PubMed
  • Altun,M.; Walter,T.S.; Kramer,H.B.; Herr,P.; Iphöfer,A.; Boström,J.; David,Y.; Komsany,A.; Ternette,N.; Navon,A.; Stuart,D.I.; Ren,J.; Kessler,B.M.; (2015). The human otubain2-ubiquitin structure provides insights into the cleavage specificity of poly-ubiquitin-linkages. PLoS ONE: 10 1, e011534419326203 DOI: 10.1371/journal.pone.0115344 HZI repository PubMed
  • Wu,Ching-Fang; Andzinski,Lisa; Kasnitz,Nadine; Kröger,Andrea; Klawonn,Frank; Lienenklaus,Stefan; Weiss,Siegfried; Jablonska,Jadwiga; (2015). The lack of type I interferon induces neutrophil-mediated pre-metastatic niche formation in the mouse lung. International Journal of Cancer: 137, 837-847 PubMed
  • Casilag,F.; Lorenz,A.; Kruger,J.; Klawonn,F.; Weiss,S.; Häußler,S.; (2015). The LasB elastase of Pseudomonas aeruginosa acts in concert with alkaline protease AprA to prevent flagellin-mediated immune recognition. Infection and Immunity: 84, 162-171 PubMed
  • Kayser,H.; Nimtz,M.; Ringler,P.; Muller,S.A.; (2015). Very high-density lipoprotein and vitellin as carriers of novel biliverdins IXalpha with a farnesyl side-chain presumably derived from heme A in Spodoptera littoralis. 68, 41-51 DOI: 10.1016/j.ibmb.2015.10.017 HZI repository PubMed
  • Nieter,A.; Haase-Aschoff,P.; Linke,D.; Nimtz,Manfred; Berger,R.G.; (2014). A halotolerant type A feruloyl esterase from Pleurotus eryngii. Fungal Biology: 118 3, 348-357 PubMed
  • Linke,D.; Lehnert,N.; Nimtz,Manfred; Berger,R.G.; (2014). An alcohol oxidase of Phanerochaete chrysosporium with a distinct glycerol oxidase activity. Enzyme Microbial Technology: 61-62, 7-12 PubMed
  • Niggemann,Jutta; Bozko,P.; Bruns,Nicole; Wodtke,Anne; Gieseler,M.T.; Thomas,K.; Jahns,C.; Nimtz,Manfred; Reupke,I.; Brüser,T.; Auling,G.; Malek,N.; Kalesse,Markus; (2014). Baceridin, a cyclic hexapeptide from an epiphytic bacillus strain, inhibits the proteasome. ChemBioChem: 15 7, 1021-102914397633 WEBURLS
  • Bui,T.H.; Wray,Victor; Nimtz,Manfred; Fossen,T.; Preisitsch,M.; Schröder,G.; Wende,K.; Heiden,S.E.; Mundt,S.; (2014). Balticidins A-D, antifungal hassallidin-like lipopeptides from the Baltic Sea cyanobacterium Anabaena cylindrica Bio33. Journal of Natural Products: 77 6, 1287-129615206025 WEBURLS
  • Sztajer,H.; Szafranski,S.P.; Tomasch,Jürgen; Reck,Michael; Nimtz,Manfred; Rohde,Manfred; Wagner-Döbler,Irene; (2014). Cross-feeding and interkingdom communication in dual-species biofilms of Streptococcus mutans and Candida albicans. ISME Journal: 8 11, 2256-2271 DOI: 10.1038/ismej.2014.73 HZI repository PubMed
  • Ince,K.; Klawonn,Frank; (2014). Decision and regression trees in the context of attributes with different granularity levels. Studies in Fuzziness and Soft Computing: 285, 331-342
  • Vanz,A.L.; Nimtz,Manfred; Rinas,Ursula; (2014). Decrease of UPR- and ERAD-related proteins in Pichia pastoris during methanol-induced secretory insulin precursor production in controlled fed-batch cultures. Microbial Cell Factories: 13 1, art.no. 2314752859 DOI: 10.1186/1475-2859-13-23 HZI repository PubMed
  • Milanez-Almeida,P.; Klawonn,F.; Meyer-Hermann,M.; Hühn,J.; (2014). Differential control of immune cell homeostasis by Foxp3(+) regulatory T cells in murine peripheral lymph nodes and spleen. 4 3, 147-155 PubMed
  • Kleine-Ostmann,T.; Jastrow,C.; Baaske,K.; Heinen,B.; Schwerdtfeger,M.; Kärst,Uwe; Hintzsche,H.; Stopper,H.; Koch,M.; Schrader,T.; (2014). Field exposure and dosimetry in the thz frequency range. IEEE Transactions on Terahertz Science and Technology: 4 1, 12-252156342X WEBURLS
  • Probst,C.; Ringel,P.; Boysen,V.; Wirsing,Lisette; Alexander,M.M.; Mendel,R.R.; Kruse,T.; (2014). Genetic characterization of the Neurospora crassa molybdenum cofactor biosynthesis. Fungal Genetics and Biology: 66, 69-78 PubMed
  • Ince,K.; Klawonn,Frank; (2014). Handling different levels of granularity within naive Bayes classifiers. Lecture Notes in Computer Science: 8206 LNCS, 521-528
  • Tschumitschew,K.; Klawonn,Frank; (2014). High against low quantile comparison for biomarker and classifier evalution. Lecture Notes in Computer Science: 8206 LNCS, 561-568
  • Shevchuk,Olga; Abidi,Nada; Klawonn,Frank; Wissing,Josef; Nimtz,Manfred; Kugler,C.; Steinert,M.; Goldmann,T.; Jänsch,Lothar; (2014). HOPE-fixation of lung tissue allows retrospective proteome and phosphoproteome studies. Journal of Proteome Research: 13 11, 5230-523915353893 WEBURLS
  • Jäger,J.; Marwitz,S.; Tiefenau,J.; Rasch,J.; Shevchuk,Olga; Kugler,C.; Goldmann,T.; Steinert,M.; (2014). Human lung tissue explants reveal novel interactions during Legionella pneumophila infections. Infection and Immunity: 82 1, 275-28500199567 WEBURLS
  • Magnowska,Z.; Hartmann,I.; Jänsch,Lothar; Jahn,D.; (2014). Membrane Proteomics of Pseudomonas aeruginosa. Methods in Molecular Biology: 1149, 213-224 PubMed
  • Montvida,O.; Klawonn,Frank; (2014). Relative cost curves: An alternative to AUC and an extension to 3-class problems. Kybernetika: 50 5, 647-66000235954 WEBURLS
  • Kayser,H.; Wray,Victor; Nimtz,Manfred; (2014). Structure of a novel farnesylated bilin from an insect - Formation by ?-cleavage of heme A of mitochondrial cytochrome c oxidases?. FEBS Journal: 281 10, 2366-237617424658 DOI: 10.1111/febs.12789 HZI repository PubMed
  • Schreiber,L.; Pietzsch,Beate; Flöß,Stefan; Farah,Carla; Jänsch,Lothar; Schmitz,Ingo; Hühn,Jochen; (2014). The Treg-specific demethylated region stabilizes Foxp3 expression independently of NF-?B signaling. PLoS ONE: 9 2, e8831819326203 WEBURLS
  • Wuestefeld,T.; Pesic,M.; Rudalska,R.; Dauch,D.; Longerich,T.; Kang,T.W.; Yevsa,T.; Heinzmann,F.; Hoenicke,L.; Hohmeyer,A.; Potapova,A.; Rittelmeier,I.; Jarek,Michael; Geffers,Robert; Scharfe,Maren; Klawonn,Frank; Schirmacher,P.; Malek,N.P.; Ott,M.; Nordheim,A.; Vogel,A.; Manns,M.P.; Zender,L.; (2013). A direct in vivo RNAi screen identifies MKK4 as a key regulator of liver regeneration. Cell: 153 2, 389-40100928674 WEBURLS
  • Elsaman,A.M.; Radwan,A.R.; Akmatov,M.K.; Della Beffa,Cristina; Walker,A.; Mayer,C.T.; Dai,L.; Nativ,S.; Rygg,M.; Atsali,E.; Saijo,K.; Ogdie,A.R.; Srinivasulu,N.; Fathi,N.; Schumacher,H.R.; Pessler,Frank; (2013). Amyloid arthropathy associated with multiple myeloma: A systematic analysis of 101 reported cases. Seminars in Arthritis and Rheumatism: 43 3, 405-41200490172 WEBURLS
  • Haase-Aschoff,P.; Linke,D.; Nimtz,Manfred; Popper,L.; Berger,R.G.; (2013). An enzyme from Auricularia auricula-judae combining both benzoyl and cinnamoyl esterase activity. Process Biochemistry: 48 12, 1872-187813595113 DOI: 10.1016/j.procbio.2013.09.016 HZI repository PubMed
  • Klawonn,Frank; Jayaram,B.; Crull,Katja; Kukita,A.; Pessler,Frank; (2013). Analysis of contingency tables based on generalized median polish with power transformations and non-additive models. Health Information Science & Systems: 1, 11
  • Jayaram,B.; Klawonn,Frank; (2013). Can fuzzy clustering avoid local minima and undesired partitions?. Studies in Computational Intelligence: 445, 31-44
  • Klawonn,Frank; (2013). Case-centred multidimensional scaling for classification visualisation in medical diagnosis. LNCS: 7798, 137-148 DOI: 10.1007/978-3-642-37899-7_12 HZI repository
  • Tschumitschew,K.; Klawonn,Frank; (2013). Change Detection Based on the Distribution of p-Values.: Towards Advanced Data Analysis by Combining Soft Computing and Statistics. Borgelt,C.; Gil,M.A.; Sousa,J.M.C.; Verleysen,M.; (Ed.). Berlin : Springer, 191-203 ISBN: 978-3-642-30277-0 DOI: 10.1007/978-3-642-30278-7_16
  • Jayaram,B.; Klawonn,Frank; (2013). Generalised median Polish based on additive generators. Advances in Intelligent Systems and Computing: 190 AISC, 439-448
  • Preusse,Matthias; Tantawy,M.A.; Klawonn,Frank; Schughart,Klaus; Pessler,Frank; (2013). Infection- and procedure-dependent effects on pulmonary gene expression in the early phase of influenza A virus infection in mice. BMC Microbiology: 13 1, art.no. 29314712180 WEBURLS
  • Kaba,H.E.; Nimtz,Manfred; Müller,Peter P.; Bilitewski,Ursula; (2013). Involvement of the mitogen activated protein kinase Hog1p in the response of Candida albicans to iron availability. BMC Microbiology: 13, 16 PubMed
  • Nicke,T.; Schnitzer,T.; Münch,K.; Adamczack,J.; Haufschildt,K.; Buchmeier,S.; Kucklick,M.; Felgenträger,Undine; Jänsch,Lothar; Riedel,K.; Layer,G.; (2013). Maturation of the cytochrome cd1 nitrite reductase NirS from Pseudomonas aeruginosa requires transient interactions between the three proteins NirS, NirN and NirF. Bioscience Reports: 33 3, 529-53901448463 DOI: 10.1042/BSR20130043 HZI repository PubMed
  • Gamrekelashvili,J.; Kapanadze,T.; Han,M.; Wissing,J.; Ma,C.; Jänsch,Lothar; Manns,M.P.; Armstrong,T.; Jaffee,E.; White,A.O.; Citrin,D.E.; Korangy,F.; Greten,T.F.; (2013). Peptidases released by necrotic cells control CD8+ T cell cross-priming. Journal of Clinical Investigation: 123 11, 4755-476800219738 DOI: 10.1172/JCI65698 HZI repository PubMed
  • Zelena,K.; Takenberg,M.; Lunkenbein,S.; Woche,S.K.; Nimtz,Manfred; Berger,R.G.; (2013). PfaH2: A novel hydrophobin from the ascomycete Paecilomyces farinosus. Biotechnology and Applied Biochemistry: 60 2, 147-15408854513 DOI: 10.1002/bab.1077 HZI repository PubMed
  • Scheiter,Maxi; Bulitta,Björn; van,Ham Marco; Klawonn,Frank; Konig,S.; Jänsch,Lothar; (2013). Protein Kinase Inhibitors CK59 and CID755673 Alter Primary Human NK Cell Effector Functions. Frontiers in Immunology: 4, 66 DOI: 10.3389/fimmu.2013.00066 HZI repository PubMed
  • Scheiter,Maxi; Lau,Ulrike; van,Ham Marco; Bulitta,Björn; Gröbe,Lothar; Garritsen,H.; Klawonn,Frank; Konig,S.; Jänsch,Lothar; (2013). Proteome analysis of distinct developmental stages of human natural killer (NK) cells. Molecular and Cellular Proteomics: 12 5, 1099-1114 DOI: 10.1074/mcp.M112.024596 HZI repository PubMed
  • Tielen,P.; Rosin,N.; Meyer,A.K.; Dohnt,K.; Haddad,I.; Jänsch,Lothar; Klein,J.; Narten,M.; Pommerenke,C.; Scheer,M.; Schobert,M.; Schomburg,D.; Thielen,B.; Jahn,D.; (2013). Regulatory and Metabolic Networks for the Adaptation of Pseudomonas aeruginosa Biofilms to Urinary Tract-Like Conditions. PLoS ONE: 8 8, e71845 DOI: 10.1371/journal.pone.0071845 HZI repository PubMed
  • Hintzsche,H.; Jastrow,C.; Heinen,B.; Baaske,K.; Kleine-Ostmann,T.; Schwerdtfeger,M.; Shakfa,M.K.; Kärst,Uwe; Koch,M.; Schrader,T.; Stopper,H.; (2013). Terahertz Radiation at 0.380 THz and 2.520 THz Does Not Lead to DNA Damage in Skin Cells In Vitro. Radiation Research: 179 1, 38-45 PubMed
  • Bodenhofer,U.; Krone,M.; Klawonn,Frank; (2013). Testing noisy numerical data for monotonic association. Information Sciences: 245, 21-37 DOI: 10.1016/j.ins.2012.11.026 HZI repository PubMed
  • Pustelny,C.; Brouwer,S.; Musken,M.; Bielecka,A.; Dotsch,A.; Nimtz,Manfred; Häußler,Susanne; (2013). The peptide chain release factor methyltransferase PrmC is essential for pathogenicity and environmental adaptation of Pseudomonas aeruginosa PA14. Environmental Microbiology: 15 2, 597-609 DOI: 10.1111/1462-2920.12040 HZI repository PubMed
  • Beffa,Cristina D.; Slansky,E.; Pommerenke,C.; Klawonn,Frank; Li,J.; Dai,L.; Schumacher,H.R.,Jr.; Pessler,Frank; (2013). The relative composition of the inflammatory infiltrate as an additional tool for synovial tissue classification. PLoS ONE: 8 8, e72494 PubMed
  • Della Beffa,Cristina; Slansky,E.; Pommerenke,C.; Klawonn,Frank; Li,J.; Dai,L.; Schumacher,H.R.,Jr.; Pessler,Frank; (2013). The relative composition of the inflammatory infiltrate as an additional tool for synovial tissue classification. PLoS ONE: 8 8, e72494 DOI: 10.1371/journal.pone.0072494 HZI repository PubMed
  • Dahl,J.U.; Radon,C.; Buhning,M.; Nimtz,Manfred; Leichert,L.I.; Denis,Y.; Jourlin-Castelli,C.; Iobbi-Nivol,C.; Mejean,V.; Leimkuhler,S.; (2013). The sulfur carrier protein TusA has a pleiotropic role in Escherichia coli that also affects molybdenum cofactor biosynthesis. Journal of Biological Chemistry: 288 8, 5426-5442 DOI: 10.1074/jbc.M112.431569 HZI repository PubMed
  • Abidi,N.; Klawonn,Frank; Thumfart,J.O.; (2013). Time point estimation of a single sample from high throughput experiments based on time-resolved data and robust correlation measures. LNCS (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)): 8207, 32-43
  • Duvel,J.; Bertinetti,D.; Moller,S.; Schwede,F.; Morr,M.; Wissing,J.; Radamm,L.; Zimmermann,B.; Genieser,H.G.; Jänsch,Lothar; Herberg,F.W.; Häußler,Susanne; (2012). A chemical proteomics approach to identify c-di-GMP binding proteins in Pseudomonas aeruginosa. Journal of Microbiological Methods: 88 2, 229-236 PubMed
  • Pommerenke,C.; Friedrich,B.; Johl,T.; Jänsch,Lothar; Häußler,Susanne; Klawonn,F.; (2012). A modified apriori algorithm for analysing high-dimensional gene data. LNCS: 6936, 236-243
  • Winkler,R.; Kruse,R.; Klawonn,Frank; (2012). A New Distance Function for Fuzzy c-Means Clustering in High-Dimensional Spaces with Applications in S.O.D.A..: Data Analysis Methods and its Applications. Pociecha,J.; Decker,R.; (Ed.). Warszawa : Wydawnictwo C.H. Beck ISBN: 978-83-7252-578-9
  • Linke,D.; Matthes,R.; Nimtz,Manfred; Zorn,H.; Bunzel,M.; Berger,R.G.; (2012). An esterase from the basidiomycete Pleurotus sapidus hydrolyzes feruloylated saccharides. Applied Microbiology and Biotechnology: 97 16, 7241-7251 PubMed
  • Zaoui,C.; Overhage,J.; Lons,D.; Zimmermann,A.; Musken,M.; Bielecki,P.; Pustelny,C.; Becker,T.; Nimtz,Manfred; Häußler,Susanne; (2012). An orphan sensor kinase controls quinolone signal production via MexT in Pseudomonas aeruginosa. Molecular Microbiology: 83 3, 536-547 PubMed
  • Jayaram,B.; Klawonn,Frank; (2012). Can unbounded distance measures mitigate the curse of dimensionality?. International Journal of Data Mining, Modelling and Management: 4 4, 361-383 DOI: 10.1504/IJDMMM.2012.049883
  • Kumar,A.; Saini,S.; Wray,V.; Nimtz,Manfred; Prakash,A.; Johri,B.N.; (2012). Characterization of an antifungal compound produced by Bacillus sp. strain A(5) F that inhibits Sclerotinia sclerotiorum. Journal of Basic Microbiology: 52 6, 670-678 DOI: 10.1002/jobm.201100463 PubMed
  • Hain,T.; Ghai,R.; Billion,A.; Kuenne,C.T.; Steinweg,C.; Izar,B.; Mohamed,W.; Mraheil,M.A.; Domann,E.; Schaffrath,S.; Kärst,Uwe; Goesmann,A.; Oehm,S.; Puhler,A.; Merkl,R.; Vorwerk,S.; Glaser,P.; Garrido,P.; Rusniok,C.; Buchrieser,C.; Goebel,W.; Chakraborty,T.; (2012). Comparative genomics and transcriptomics of lineages I, II, and III strains of Listeria monocytogenes. BMC GENOMICS: 13, 144 PubMed
  • Klawonn,F.; Abidi,N.; Berger,E.; Jänsch,Lothar*; (2012). Curve fitting for short time series data from high throughput experiments with correction for biological variation. Lecture Notes in Computer Science: LNCS 7619, 150-160
  • Johl,T.; Nimtz,Manfred; Jänsch,Lothar; Klawonn,Frank; (2012). Detecting glycosylations in complex samples. IFIP Advances in Information and Communication Technology: 381 AICT (Part 1) 234, 243
  • Nedelko,Tatiana; Kollmus,Heike; Klawonn,Frank; Spijker,S.; Lu,L.; Hessman,M.; Alberts,R.; Williams,R.W.; Schughart,Klaus; (2012). Distinct gene loci control the host response to influenza H1N1 virus infection in a time-dependent manner. BMC GENOMICS: 13, 411 DOI: 10.1186/1471-2164-13-411 HZI repository PubMed
  • König,S.; Probst-Kepper,M.; Reinl,T.; Jeron,A.; Hühn,Jochen; Schraven,B.; Jänsch,Lothar; (2012). First insight into the kinome of human regulatory T cells. PLoS ONE: 7 7, e40896 DOI: 10.1371/journal.pone.0040896 HZI repository PubMed
  • Lehrke,M.; Rump,S.; Heidenreich,T.; Wissing,Josef; Mendel,R.R.; Bittner,F.; (2012). Identification of persulfide-binding and disulfide-forming cysteine residues in the NifS-like domain of the molybdenum cofactor sulfurase ABA3 by cysteine-scanning mutagenesis. Biochemistry Journal: 441 3, 823-832 PubMed
  • Tschumitschew,K.; Klawonn,F.; (2012). Incremental statistical measures.: Learning in Non-Stationary Environments: Methods and Applications. Springer New York, 21-55 ISBN: 9781441980205 (ISBN); 1441980199 (ISBN); 9781441980199 (ISBN) WEBURLS
  • König,S.; Nimtz,Manfred; Scheiter,M.; Ljunggren,H.G.; Bryceson,Y.T.; Jänsch,Lothar; (2012). Kinome analysis of receptor-induced phosphorylation in human natural killer cells. PLoS ONE: 7 1, e29672 PubMed
  • Klawonn,Frank; Crull,Katja; Kukita,A.; Pessler,Frank; (2012). Median polish with power transformations as an alternative for the analysis of contingency tables with patient data. LNCS (Lecture Notes in Computer Sience (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)): 7231, 25-35
  • Vanz,A.L.; Lünsdorf,Heinrich; Adnan,A.; Nimtz,Manfred; Gurramkonda,C.; Khanna,N.; Rinas,Ursula; (2012). Physiological response of Pichia pastoris GS115 to methanol-induced high level production of the Hepatitis B surface antigen: catabolic adaptation, stress responses, and autophagic processes. Microbial Cell Factories: 11, 103 PubMed
  • Iphofer,A.; Kummer,A.; Nimtz,Manfred; Ritter,A.; Arnold,T.; Frank,R.; van den Heuvel,Joop; Kessler,B.M.; Jänsch,Lothar; Franke,R.; (2012). Profiling ubiquitin linkage specificities of deubiquitinating enzymes with branched ubiquitin isopeptide probes. ChemBioChem: 13 10, 1416-1420 PubMed
  • Arendt,W.; Hebecker,S.; Jager,S.; Nimtz,Manfred; Moser,J.; (2012). Resistance phenotypes mediated by aminoacyl-phosphatidylglycerol synthases. Journal of Bacteriology: 194 6, 1401-1416 PubMed
  • Grigull,L.; Betzel,C.; Schumacher,U.; Rother,A.-K.; Mücke,U.; Klawonn,F.; Lechner,W.M.; (2012). Should paediatricians use a computer to receive diagnostic support? [Sollten Kinderärzte zur Unterstützung bei der Diagnostik einen Computer nutzen?]. Pediatrische Praxis: 79 4, 545-555
  • Gernert,C.; Klawonn,Frank; Jänsch,Lothar; (2012). SignalNet: Visualization of signal network responses by quantitative proteome data. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics: 6936 LNCS, 361-368
  • Klawonn,Frank; (2012). Significance tests to identify regulated proteins based on a large number of small samples. Kybernetika: 48 3, 478-493
  • Gernert,C.; Berger,E.; Klawonn,F.; Jänsch,Lothar; (2012). Tackling misleading peptide regulation fold changes in quantitative proteomics. Advances in Intelligent and Soft Computing: 154, 269-276
  • Hintzsche,H.; Jastrow,C.; Kleine-Ostmann,T.; Kärst,Uwe; Schrader,T.; Stopper,H.; (2012). Terahertz Electromagnetic Fields (0.106 THz) Do Not Induce Manifest Genomic Damage In Vitro. PLoS ONE: 7 9, e46397 DOI: 10.1371/journal.pone.0046397 HZI repository PubMed
  • von Zur,Muhlen C.; Schiffer,E.; Sackmann,C.; Zurbig,P.; Neudorfer,I.; Zirlik,A.; Htun,N.; Iphofer,A.; Jänsch,Lothar; Mischak,H.; Bode,C.; Chen,Y.C.; Peter,K.; (2012). Urine Proteome Analysis Reflects Atherosclerotic Disease in an ApoE-/- Mouse Model and Allows the Discovery of New Candidate Biomarkers in Mouse and Human Atherosclerosis. Molecular and Cellular Proteomics: 11 7, M111 PubMed
  • Hebecker,S.; Arendt,W.; Heinemann,I.U.; Tiefenau,J.H.; Nimtz,Manfred*; Rohde,Manfred*; Soll,D.; Moser,J.; (2011). Alanyl-phosphatidylglycerol synthase: mechanism of substrate recognition during tRNA-dependent lipid modification in Pseudomonas aeruginosa. Molecular Microbiology: 80 4, 935-950 PubMed
  • Klawonn,Frank*; Höppner,F.; May,S.; (2011). An alternative to ROC and AUC analysis of classifiers. LNCS (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)): 7014, 210-221
  • Langlotz,C.; Schollmeyer,M.; Coplin,D.L.; Nimtz,Manfred*; Geider,K.; (2011). Biosynthesis of the repeating units of the exopolysaccarides amylovoran from Erwinia amylovora and stewartan from Pantoea stewartii. Physiological and Molecular Plant Pathology: 75 4, 163-169 DOI: 10.1016/j.pmpp.2011.04.001 HZI repository PubMed
  • Lunkenbein,S.; Takenberg,M.; Nimtz,Manfred*; Berger,R.G.; (2011). Characterization of a hydrophobin of the ascomycete Paecilomyces farinosus. Journal of Basic Microbiology: 51 4, 404-414 PubMed
  • Georgieva,O.; Tschumitschew,K.; Klawonn,Frank*; (2011). Cluster validity measures based on the minimum description length principle. Lecture Notes in Computer Science: 6881 LNAI (part 1), 82-89
  • Buchrieser,C.; Rusniok,C.; Garrido,P.; Hain,T.; Scortti,M.; Lampidis,R.; Kärst,Uwe*; Chakraborty,T.; Cossart,P.; Kreft,J.; Vazquez-Boland,J.A.; Goebel,W.; Glaser,P.; (2011). Complete genome sequence of the animal pathogen Listeria ivanovii, which provides insights into host specificities and evolution of the genus Listeria1. Journal of Bacteriology: 193 23, 6787-6788 PubMed
  • Metzger,J.; Chatzikyrkou,C.; Broecker,V.; Schiffer,E.; Jänsch,Lothar*; Iphoefer,A.; Mengel,M.; Mullen,W.; Mischak,H.; Haller,H.; Gwinner,W.; (2011). Diagnosis of subclinical and clinical acute T-cell-mediated rejection in renal transplant patients by urinary proteome analysis. Proteomics -Clinical Applications: 5 5-6, 322-333 PubMed
  • Voss,M.; Nimtz,Manfred*; Leimkuhler,S.; (2011). Elucidation of the Dual Role of Mycobacterial MoeZR in Molybdenum Cofactor Biosynthesis and Cysteine Biosynthesis. PLoS ONE: 6 11, e28170 DOI: 10.1371/journal.pone.0028170 HZI repository PubMed
  • Della Beffa,Cristina*; Klawonn,Frank*; Menetski,J.P.; Schumacher,H.R.; Pessler,Frank*; (2011). Evaluation of glyceraldehyde-3-phosphate, prolylpeptidyl isomerase A, and a set of stably expressed genes as reference mRNAs in urate crystal inflammation. BMC Research Notes: 4, 4431756-0500 DOI: 10.1186/1756-0500-4-443 HZI repository
  • Winkler,R.; Klawonn,Frank*; Kruse,R.; (2011). Fuzzy clustering with polynomial fuzzifier function in connection with m-estimators. Applied and Computational Mathematics: 10 1, 146-163
  • Bartsch,A.; Bunk,B.; Haddad,I.; Klein,J.; Munch,R.; Johl,T.; Karst,U.; Jänsch,Lothar*; Jahn,D.; Retter,I.; (2011). GeneReporter--sequence-based document retrieval and annotation. Bioinformatics: 27 7, 1034-1035 DOI: 10.1093/bioinformatics/btr047 HZI repository PubMed
  • Eisele,N.; Linke,D.; Nimtz,Manfred*; Berger,R.G.; (2011). Heterologous expression, refolding and characterization of a salt activated subtilase from Pleurotus ostreatus. Process Biochemistry: 46 9, 1840-1846
  • Hemmen,K.; Reinl,T.; Buttler,K.; Behler,F.; Dieken,H.; Jänsch,Lothar*; Wilting,J.; Weich,Herbert A.*; (2011). High-resolution mass spectrometric analysis of the secretome from mouse lung endothelial progenitor cells. Angiogenesis: 14 2, 163-172 DOI: 10.1007/s10456-011-9200-x HZI repository PubMed
  • Krone,M.; Klawonn,Frank*; Lührs,Thorsten*; (2011). Identification of nuclear magnetic resonance signals via Gaussian mixture decomposition. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics): 7014 LNCS, 234-245
  • Novoselova,N.; Klawonn,Frank*; Johl,T.; Reinl,T.; Jänsch,Lothar*; (2011). Identification of peptides with deviating regulation factors using a robust clustering scheme. Advances in Intelligent and Soft Computing: 93, 263-270
  • Eberl,L.; Riedel,Katharina*; (2011). Mining quorum sensing regulated proteins - role of bacterial cell-to-cell communication in global gene regulation as assessed by proteomics. Proteomics: 11 15, 3070-3085
  • Babiychuk,E.; Vandepoele,K.; Wissing,J.; Garcia-Diaz,M.; De,Rycke R.; Akbari,H.; Joubes,J.; Beeckman,T.; Jänsch,Lothar*; Frentzen,M.; Van Montagu,M.C.; Kushnir,S.; (2011). Plastid gene expression and plant development require a plastidic protein of the mitochondrial transcription termination factor family. Proceedings of the National Academy of Sciences USA: 108 16, 6674-6679 DOI: 10.1073/pnas.1103442108 PubMed
  • El-Baky,H.A.; Linke,D.; Nimtz,Manfred*; Berger,R.G.; (2011). PsoP1, a Milk-Clotting Aspartic Peptidase from the Basidiomycete Fungus Piptoporus soloniensis. Journal of Agricultural and Food Chemistry: 59 18, 10311-10316 PubMed
  • Krone,M.; Klawonn,Frank*; (2011). Rank correlation coefficient correction by removing worst cases.: Information Processing and Management of Uncertainty in Knowledge-Based Systems: Theory and Methods. Hüllermeier,E.; Kruse,R.; Hoffmann,F.; (Ed.). Berlin : Springer, 356-364
  • Darpel,K.E.; Langner,K.F.; Nimtz,Manfred*; Anthony,S.J.; Brownlie,J.; Takamatsu,H.H.; Mellor,P.S.; Mertens,P.P.; (2011). Saliva proteins of vector culicoides modify structure and infectivity of bluetongue virus particles. PLoS ONE: 6 3, e17545 DOI: 10.1371/journal.pone.0017545 HZI repository PubMed
  • Abd El-Baky,H.; Linke,D.; Nimtz,Manfred*; Metry,W.; El-Demerdash,O.; Berger,R.G.; (2011). The extracellular aspartic peptidase of basidiomycete Wolfiporia cocos is a highly efficient milk clotting enzyme. Milchwissenschaft: 66 4, 406-409
  • Eisele,N.; Linke,D.; Bitzer,K.; Na'amnieh,S.; Nimtz,Manfred*; Berger,R.G.; (2011). The first characterized asparaginase from a basidiomycete, Flammulina velutipes. Bioresource Technology: 102 3, 3316-3321 PubMed
  • Dahl,J.U.; Urban,A.; Bolte,A.; Sriyabhaya,P.; Donahue,J.L.; Nimtz,Manfred*; Larson,T.J.; Leimkuhler,S.; (2011). The Identification of a Novel Protein Involved in Molybdenum Cofactor Biosynthesis in Escherichia coli. Journal of Biological Chemistry: 286 41, 35801-35812 PubMed
  • Bodor,A.M.; Jänsch,Lothar*; Wissing,J.; Wagner-Döbler,Irene*; (2011). The luxS mutation causes loosely-bound biofilms in Shewanella oneidensis. BMC Research Notes: 4, 180 PubMed
  • Trunk,K.; Benkert,B.; Quack,N.; Munch,R.; Scheer,M.; Garbe,J.; Jänsch,Lothar*; Trost,M.; Wehland,Jürgen*; Buer,J.; Jahn,M.; Schobert,M.; Jahn,D.; (2010). Anaerobic adaptation in Pseudomonas aeruginosa : definition of the Anr and Dnr regulons. Environmental Microbiology: 12 6, 1719-1733 PubMed
  • Steinke,N.; Kaller,M.; Nimtz,Manfred*; Baro,A.; Laschat,S.; (2010). Columnar liquid crystals derived from crown ethers with two lateral ester-substituted ortho-terphenyl units: Unexpected destabilisation of the mesophase by potassium iodide. Liquid Crystals: 37 9, 1139-1149
  • Mischak,H.; Kolch,W.; Aivaliotis,M.; Bouyssie,D.; Court,M.; Dihazi,H.; Dihazi,G.H.; Franke,J.; Garin,J.; de Peredo,A.G.; Iphöfer,A.; Jänsch,Lothar*; Lacroix,C.; Makridakis,M.; Masselon,C.; Metzger,J.; Monsarrat,B.; Mrug,M.; Norling,M.; Novak,J.; Pich,A.; Pitt,A.; Bongcam-Rudloff,E.; Siwy,J.; Suzuki,H.; Thongboonkerd,V.; Wang,L.-S.; Zoidakis,J.; Zurbig,P.; Schanstra,J.P.; Vlahou,A.; (2010). Comprehensive human urine standards for comparability and standardization in clinical proteome analysis. Proteomics - Clinical Applications: 4 4, 464-478
  • Badar,M.; Hemmen,K.; Nimtz,Manfred*; Stieve,M.; Stiesch,M.; Lenarz,T.; Hauser,Hansjörg*; Möllmann,U.; Vogt,S.; Schnabelrauch,M.; Müller,Peter P.*; (2010). Evaluation of Madurahydroxylactone as a Slow Release Antibacterial Implant Coating. Open Biomedical Engineering Journal: 4, 263-270
  • Pommerenke,C.; Musken,M.; Becker,T.; Dotsch,A.; Klawonn,Frank*; Häußler,Susanne*; (2010). Global genotype-phenotype correlations in Pseudomonas aeruginosa. PLoS Pathogens: 6 8, 89-90 DOI: 10.1371/journal.ppat.1001074 HZI repository PubMed
  • Stepanova,T.; Smal,I.; van,Haren J.; Akinci,U.; Liu,Z.; Miedema,M.; Limpens,R.; van,Ham Marco*; van der,Reijden M.; Poot,R.; Grosveld,F.; Mommaas,M.; Meijering,E.; Galjart,N.; (2010). History-dependent catastrophes regulate axonal microtubule behavior. Current biology: 20 11, 1023-1028 PubMed
  • Teutschbein,J.; Gross,W.; Nimtz,Manfred*; Milkowski,C.; Hause,B.; Strack,D.; (2010). Identification and localization of a lipase-like acyltransferase in phenylpropanoid metabolism of tomato (Solanum lycopersicum)1. Journal of Biological Chemistry: 285 49, 38374-38381 PubMed
  • Tschumitschew,K.; Klawonn,Frank*; (2010). Incremental quantile estimation. Evolving Systems: 1 4, 253-264
  • Klodmann,J.; Sunderhaus,S.; Nimtz,Manfred*; Jänsch,Lothar*; Braun,H.P.; (2010). Internal architecture of mitochondrial complex I from Arabidopsis thaliana. Plant Cell: 22 3, 797-810 PubMed
  • El-Banna,A.; Hajirezaei,M.R.; Wissing,Josef*; Ali,Z.; Vaas,L.; Heine-Dobbernack,E.; Jacobsen,H.J.; Schumacher,H.M.; Kiesecker,H.; (2010). Over-expression of PR-10a leads to increased salt and osmotic tolerance in potato cell cultures. Journal of Biotechnology: 150 3, 277-287 PubMed
  • Lu,X.; Sun,J.; Nimtz,Manfred*; Wissing,J.; Zeng,A.-P.; Rinas,Ursula*; (2010). The intra- and extracellular proteome of Aspergillus niger growing on defined medium with xylose or maltose as carbon substrate. Microbial Cell Factories: 9 23, 1-13 DOI: 10.1186/1475-2859-9-23 HZI repository PubMed
  • Tschumitschew,K.; Klawonn,Frank*; (2010). The need for benchmarks with data from stochastic processes and meta-models in evolving systems.: Proceedings of the International Symposium on Evolving Intelligent Systems. Angelov,P.; Filev,D.; Kasabov,N.; (Ed.). Leicester : SSAISB, 30-33
  • Maahs,D.M.; Siwy,J.; Argiles,A.; Cerna,M.; Delles,C.; Dominiczak,A.F.; Gayrard,N.; Iphöfer,A.; Jänsch,Lothar*; Jerums,G.; Medek,K.; Mischak,H.; Navis,G.J.; Roob,J.M.; Rossing,K.; Rossing,P.; Rychlik,I.; Schiffer,E.; Schmieder,R.E.; Wascher,T.C.; Winklhofer-Roob,B.M.; Zimmerli,L.U.; Zurbig,P.; Snell-Bergeon,J.K.; (2010). Urinary collagen fragments are significantly altered in diabetes: a link to pathophysiology. PLoS ONE: 5 9 DOI: 10.1371/journal.pone.0013051 HZI repository PubMed
  • Fraatz,M.A.; Riemer,S.J.L.; Stober,R.; Kaspera,R.; Nimtz,Manfred*; Berger,R.G.; Zorn,H.; (2009). A novel oxygenase from Pleurotus sapidus transforms valencene to nootkatone. Journal of Molecular Catalysis B: Enzymatic: 61 3-4, 202-207
  • Tschumitschew,K.; Klawonn,Frank*; (2009). AVEDA: Statistical tests for finding interesting visulatisations. 5711 LNAI (Part 1): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics, 235-242
  • Höppner,F.; Klawonn,Frank*; (2009). Compensation of translational displacement in time series clustering using cross correlation. Lecture Notes in Computer Science: (57772 LCNS), 71-82
  • Dötsch,A.; Becker,T.; Pommerenke,C.; Magnowska,Z.; Jänsch,Lothar*; Häußler,Susanne*; (2009). Genomewide identification of genetic determinants of antimicrobial drug resistance in Pseudomonas aeruginosa. Antimicrobial Agents and Chemotherapy: 53 6, 2522-2531 DOI: 10.1128/AAC.00035-09 HZI repository PubMed
  • Krügener,S.; Zelena,K.; Zorn,H.; Nimtz,Manfred*; Berger,R.G.; (2009). Heterologous expression of an extra-cellular lipase from the basidiomycete Pleurotus sapidus. Journal of Molecular Catalysis B: Enzymatic: 57, 16-21
  • Kleine-Ostmann,T.; Jastrow,C.; Salhi,M.; Schrader,T.; Hintzsche,H.; Stopper,H.; Kärst,Uwe*; Heinen,B.; Baaske,K.; Koch,M.; (2009). In vitro field exposition of skin cells between 100 GHz and 2.52 THz.: Infrared, Millimeter, and Terahertz Waves, 2009. IRMMW-THz 2009. 34th International Conference on., 1-2
  • Weiss,S.M.; Ladwein,M.; Schmidt,D.; Ehinger,J.; Lommel,S.; Städing,K.; Beutling,U.; Disanza,A.; Frank,Ronald*; Jänsch,Lothar*; Scita,G.; Gunzer,F.; Rottner,Klemens*; Stradal,Theresia E.*; (2009). IRSp53 links the enterohemorrhagic E. coli effectors Tir and EspFU for actin pedestal formation. Cell Host and Microbe: 5 3, 244-258 PubMed
  • Hundertmark,C.; Fischer,R.; Reinl,T.; May,S.; Klawonn,F.; Jänsch,Lothar*; (2009). MS-specific noise model reveals the potential of iTRAQ in quantitative proteomics. Bioinformatics: 25 8, 1004-1011 DOI: 10.1093/bioinformatics/btn551 HZI repository PubMed
  • Reinl,T.; Nimtz,M.; Hundertmark,C.; Johl,T.; Keri,G.; Wehland,Jürgen*; Daub,H.; Jänsch,Lothar*; (2009). Quantitative phosphokinome analysis of the met pathway activated by the invasin internalin B from Listeria monocytogenes. Molecular and Cellular Proteomics: 8 12, 2778-2795 PubMed
  • Peters,K.; Dudkina,N.V.; Jänsch,Lothar*; Braun,H.P.; Boekema,E.J.; (2008). A structural investigation of complex I and I+III(2) supercomplex from Zea mays at 11-13 A resolution: Assignment of the carbonic anhydrase domain and evidence for structural heterogeneity within complex I. Biochimica et biophysica acta: 1777 1, 84-93 DOI: 10.1016/j.bbabio.2007.10.012 HZI repository PubMed
  • Hundertmark,Claudia*; Klawonn,Frank*; (2008). Clustering likelihood curves: Finding deviations from single clusters.: Hybrid Artificial Intelligence Systems. Carchado,E.; Abraham,A.; Pedrycz,W.; (Ed.). Berlin Heidelberg : Springer Verlag, 385-391 ISBN: 978-3-540-97655-7 DOI: 10.1007/978-3-540-87656-4
  • Machata,S.; Tchatalbachev,S.; Mohamed,W.; Jänsch,Lothar*; Hain,T.; Chakraborty,T.; (2008). Lipoproteins of Listeria monocytogenes are critical for virulence and TLR2-mediated immune activation. Journal of Immunology: 181 3, 2028-2035 PubMed
  • Benkert,B.; Quack,N.; Schreiber,K.; Jänsch,Lothar*; Jahn,D.; Schobert,M.; (2008). Nitrate-responsive NarX-NarL represses arginine-mediated induction of the Pseudomonas aeruginosa arginine fermentation arcDABC operon1. Microbiology: 154 Pt 10, 3053-3060 PubMed
  • Klein,J.; Leupold,S.; Munch,R.; Pommerenke,C.; Johl,T.; Karst,U.; Jänsch,Lothar*; Jahn,D.; Retter,I.; (2008). ProdoNet: identification and visualization of prokaryotic gene regulatory and metabolic networks. Nucleic Acids Research: 36 Web Server issue, W460-W464 PubMed
  • Schroder,S.; Zhang,H.; Yeung,E.S.; Jänsch,Lothar*; Zabel,C.; Watzig,H.; (2008). Quantitative gel electrophoresis: sources of variation. Journal of Proteome Research: 7 3, 1226-1234 PubMed
  • Mort,A.; Zheng,Y.; Qiu,F.; Nimtz,Manfred*; Bell-Eunice,G.; (2008). Structure of xylogalacturonan fragments from watermelon cell-wall pectin. Endopolygalacturonase can accommodate a xylosyl residue on the galacturonic acid just following the hydrolysis site. Carbohydrate Research: 343 7, 1212-1221 PubMed
  • Biedendieck,R.; Gamer,M.; Jänsch,Lothar*; Meyer,S.; Rohde,Manfred*; Deckwer,Wolf-Dieter*; Jahn,D.; (2007). A sucrose-inducible promoter system for the intra- and extracellular protein production in Bacillus megaterium. Journal of Biotechnology: 132 4, 426-430 DOI: 10.1016/j.jbiotec.2007.07.494 Full text HZI repository
  • Baumgärtner,M.; Kärst,Uwe*; Gerstel,B.; Loessner,M.; Wehland,Jürgen*; Jänsch,Lothar*; (2007). Inactivation of Lgt allows systematic characterization of lipoproteins from Listeria monocytogenes. Journal of Bacteriology: 189 2, 313-324 DOI: 10.1128/JB.00976-06 HZI repository PubMed
  • Hain,T.; Chatterjee,S.S.; Ghai,R.; Kuenne,C.T.; Billion,A.; Steinweg,C.; Domann,E.; Kärst,Uwe*; Jänsch,Lothar*; Wehland,Jürgen*; Eisenreich,W.; Bacher,A.; Joseph,B.; Schär,J.; Kreft,J.; Klumpp,J.; Loessner,M.J.; Dorscht,J.; Neuhaus,K.; Fuchs,T.M.; Scherer,S.; Doumith,M.; Jacquet,C.; Martin,P.; Cossart,P.; Glaser,P.; Buchrieser,C.; Goebel,W.; Chakraborty,T.; (2007). Pathogenomics of Listeria spp.. International Journal of Medical Microbiology: 297 7-8, 541-557 DOI: 10.1016/j.ijmm.2007.03.016
  • Newo,A.N.S.; Lützelberger,M.; Bottner,C.A.; Wehland,Jürgen*; Wissing,Josef*; Jänsch,Lothar*; Käufer,N.F.; (2007). Proteomic analysis of the U1 snRNP of Schizosaccharomyces pombe reveals three essential organism-specific proteins. Nucleic Acids Research: 35 5, 1391-1401
  • Wissing,Josef*; Jänsch,Lothar*; Nimtz,Manfred*; Dieterich,G.; Hornberger,R.; Keri,G.; Wehland,Jürgen*; Daub,H.; (2007). Proteomics analysis of protein kinases by target class-selective pre-fractionation and tandem mass spectrometry. Molecular & Cellular Proteomics: 6 3, 537-547 DOI: 10.1074/mcp.T600062-MCP200 HZI repository PubMed
  • Schreiber,K.; Boes,N.; Eschbach,M.; Jänsch,Lothar*; Wehland,J.; Bjarnsholt,T.; Giskov,M.; Hentzer,M.; Schobert,M.; (2006). Anaerobic survival of Pseudomonas aeruginosa by pyruvate fermentation requires an Usp-type stress protein. Journal of Bacteriology: 188, 659-668 DOI: 10.1128/JB.188.2.659-668.2006 HZI repository PubMed
  • Sunderhaus,S.; Dudkina,N.V.; Jänsch,Lothar*; Klodmann,J.; Heinemeyer,J.; Perales,M.; Zabaleta,E.; Boekema,E.J.; Braun,H.P.; (2006). Carbonic anhydrase subunits form a matrix-exposed domain attached to the membrane arm of mitochondrial complex I in plants. Journal of Biological Chemistry: 281 10, 6482-64880021-9258 WORKTYPE HZI repository PubMed
  • Beller,M.; Riedel,D.; Jänsch,Lothar*; Dieterich,D.; Wehland,Jürgen*; Jackle,H.; Kuhnlein,R.P.; (2006). Characterization of the Drosophila Lipid Droplet Subproteome. Molecular & Cellular Proteomics: 5, 1082-1094 DOI: 10.1074/mcp.M600011-MCP200 HZI repository PubMed
  • Wegener,C.; Reinl,T.; Jänsch,Lothar*; Predel,R.; (2006). Direct mass spectrometric peptide profiling and fragmentation of larval peptide hormone release sites in Drosophila melanogaster reveals tagma-specific peptide expression and differential processing. Journal of Neurochemistry: 96 5, 1362-13740022-3042 ISI
  • Phan-Thanh,L.; Jänsch,Lothar*; (2006). Elucidation of mechanisms of acid stress in Listeria monocytogenes by proteomic analysis.: Microbial Proteomics - Functional Biology of Whole Organisms. Humphery-Smith,I.; Hecker,M.; (Ed.). Hoboken, New Jersey : John Wiley & Sons, 75-88
  • Dieterich,G.; Kärst,Uwe*; Fischer,E.; Wehland,Jürgen*; Jänsch,Lothar*; (2006). LEGER: knowledge database and visualization tool for comparative genomics of pathogenic and non-pathogenic Listeria species. Nucleic Acids Research: 34, D402-D406
  • Reinl,Tobias*; Wissing,Josef*; Fischer,R.; Hundertmark,C.; Klawonn,F.; Daub,H.; Wehland,Jürgen*; Jänsch,Lothar*; (2006). Quantitative analysis of receptor tyrosine kinase signaling exploited by Listeria monocytogenes. Molecular & Cellular Proteomics: 5 10, S168-S168 654 Suppl.
  • Nalca,Y.; Jänsch,Lothar*; Bredenbruch,F.; Geffers,Robert*; Buer,Jan*; Häußler,Susanne*; (2006). Quorum-sensing antagonistic activities of azithromycin in Pseudomonas aeruginosa PAO1: a global approach. Antimicrobial Agents and Chemotherapy: 50, 1680-1688 DOI: 10.1128/AAC.50.5.1680-1688.2006 HZI repository PubMed
  • Schaumburg,J.; Diekmann,O.; Hagendorff,P.; Bergmann,S.; Rohde,Manfred*; Hammerschmidt,S.; Jänsch,Lothar*; Wehland,Jürgen*; Kärst,Uwe*; (2006). The cell wall subproteome of Listeria monocytogenes.: Proteomics of Microbial Pathogens. Jungblut,P.R.; Hecker,M.; (Ed.). Weinheim : Wiley-VCH, 153-177
  • Thedieck,K.; Hain,T.; Mohamed,W.; Tindall,B.; Nimtz,Manfred*; Chakraborty,T.; Wehland,Jürgen*; Jänsch,Lothar*; (2006). The MprF protein is required for lysinylation of phospholipids in listerial membranes and confers resistance to cationic antimicrobial peptides (CAMPs) on Lysteria monocytogenes. Molecular Microbiology: 62, 1325-1339 DOI: 10.1111/j.1365-2958.2006.05452.x HZI repository PubMed
  • Boes,N.; Schreiber,K.; Hartig,E.; Jaensch,Lothar*; Schobert,M.; (2006). The Pseudomonas aeruginosa universal stress protein PA4352 is essential for surviving anaerobic energy stress. Journal of Bacteriology: 188 18, 6529-65380021-9193 ISI
  • Layer,G.; Pierik,A.J.; Trost,M.; Jänsch,Lothar*; Leech,H.K.; Warren,M.J.; Rigby,S.E.; Astner,I.; Grage,K.; Breckau,D.; Heinz,Dirk W.*; Jahn,D.; (2006). The substrate radical of Escherichia coli oxygen-independent coproporphyrinogen III oxidase HemN. Journal of Biological Chemistry: 281, 15727-15734
  • Dieterich,G.; Kärst,Uwe*; Wehland,Jürgen*; Jänsch,Lothar*; (2006). VIS-O-BAC: exploratory visualization of functional genome studies from bacteria. Bioinformatics: 22 5, 630-631 DOI: 10.1093/bioinformatics/bti814
  • Trost,M.; Wehmhöner,D.; Kärst,U.; Dieterich,G.; Wehland,J.; Jänsch,L.; (2005). Comparative proteome analysis of secretory proteins from pathogenic and non-pathogenic Listeria species. Proteomics: 5, 1544-1557
  • Jacobsen,I.; Hennig-Pauka,I.; Baltes,N.; Trost,Matthias*; Gerlach,G.F.; (2005). Enzymes involved in anaerobic respiration appear to play a role in Actinobacillus pleuropneumoniae virulence. Infection and Immunity: 73 1, 226-234 DOI: 10.1128/IAI.73.1.226-234.2005 HZI repository PubMed
  • Dieterich,G.; Kärst,U.; Wehland,J.; Jänsch,L.; (2005). MineBlast: A literature presentation service supporting protein annotation by data Mining of blast results. Bioinformatics: 21, 3450-3451
  • Godl,K.; Gruss,O.J.; Eickhoff,J.; Wissing,Josef*; Blencke,S.; Weber,M.; Degen,H.; Brehmer,D.; Orfi,L.; Horvath,Z.; Keri,G.; Muller,S.; Cotten,M.; Ullrich,A.; Daub,H.; (2005). Proteomic characterization of the angiogenesis inhibitor SU6668 reveals multiple impacts on cellular kinase signaling. Cancer Research: 65 15, 6919-6926 PubMed
  • Millar,A.H.; Eubel,H.; Jänsch,Lothar*; Kruft,V.; Heazlewood,J.L.; Braun,H.P.; (2004). Mitochondrial cytochrome c oxidase and succinate dehydrogenase complexes contain plant specific subunits. Plant Molecular Biology: 56 1, 77-90 PubMed
  • Weig,M.; Jänsch,L.; Groß,U.; De Koster,C.G.; Klis,F.M.; De Groot,P.W.J.; (2004). Systematic identification of covalently-bound cell wall proteins and analysis of protein-polysaccharide linkages of the human pathogen Candida glabrata. Microbiology: 150, 3129-3144