Microbial Interactions and Processes

Microorganisms in the environment are living in complex and interacting communities. Also the surfaces of the human body are inhabited by microorganisms, where the bacterial cell number significantly exceeds that of the human cells. These communities have co-evolved with the human host and are important for human health. They can, however, also be a reservoir for pathogenic microorganisms.


Selected Publications

Blasco R, Wittich RM., Mallavarapu M, Timmis KN, Pieper DH (1995) From xenobiotic to antibiotic, formation of protoanemonin from 4-chlorocatechol by enzymes of the 3-oxoadipate pathway. J Biol Chem 270:29229-29235

Beil S, Mason J, Timmis KN, Pieper DH (1998) Identification of chlorobenzene dioxygenase sequence elements involved in dechlorination of 1,2,4,5-tetrachlorobenzene. J Bacteriol 180:5520-5528

Junca H, Pieper DH (2004) Functional gene diversity analysis in BTEX contaminated soils by means of PCR-SSCP DNA fingerprinting: comparative diversity assessment against bacterial isolates and PCR-DNA clone libraries. Environ Microbiol 6:95-110

Wos-Oxley M, Plumeier I, von Eiff C, Taudien S, Platzer M, Vilchez-Vargas R, Becker K, Pieper DH (2010) A poke into the diversity and associations within human anterior nare microbial communities. ISME J 4:839-851

Vilchez-Vargas R, Geffers R, Suárez-Diez M, Conte I, Waliczek A, Kaser VS, Kralova M, Junca H, Pieper DH (2013) Analysis of the microbial gene landscape and transcriptome for aromatic pollutants and alkane degradation using a novel internally calibrated microarray system. Environ Microbiol 15:1016-1039


  • Authors: Ehsani,E.; Hernandez-Sanabria,E.; Kerckhof,F.M.; Props,R.; Vilchez-Vargas,R.; Vital,M.; Pieper,D.H.; Boon,N.; ( Year: 2018). Title: Initial evenness determines diversity and cell density dynamics in synthetic microbial ecosystems. Journal: Sci.Rep. Volume: 8 Issue: 1, S-Page: Article number 340 DOI: 10.1038/s41598-017-18668-1 Fulltext PubMed
  • Authors: Vital,M.; Karch,A.; Pieper,D.H.; ( Year: 2017). Title: Colonic Butyrate-Producing Communities in Humans: an Overview Using Omics Data. Journal: mSystems. Volume: 2 Issue: 6, S-Page: e00130-17 DOI: 10.1128/mSystems.00130-17 HZI repository PubMed
  • Authors: Akmatov,M.K.; Koch,N.; Vital,M.; Ahrens,W.; Flesch-Janys,D.; Fricke,J.; Gatzemeier,A.; Greiser,H.; Gunther,K.; Illig,T.; Kaaks,R.; Krone,B.; Kuhn,A.; Linseisen,J.; Meisinger,C.; Michels,K.; Moebus,S.; Nieters,A.; Obi,N.; Schultze,A.; Six-Merker,J.; Pieper,D.H.; Pessler,F.; ( Year: 2017). Title: Determination of nasal and oropharyngeal microbiomes in a multicenter population-based study - findings from Pretest 1 of the German National Cohort. Journal: Sci.Rep. Volume: 7 Issue: 1, S-Page: 1855 DOI: 10.1038/s41598-017-01212-6 HZI repository PubMed
  • Authors: Deng,J.; Auchtung,J.; Konstantinidis,K.T.; Caro-Quintero,A.; Brettar,I.; Höfle,M.; Tiedje,J.M.; ( Year: 2017). Title: Divergence in gene regulation contributes to sympatric speciation of Shewanella baltica strains. Journal: Appl.Environ.Microbiol. Volume: 84 Issue: 4, S-Page: AEM.02015-17 DOI: 10.1128/AEM.02015-17 HZI repository PubMed
  • Authors: Babbar,A.; Nitsche-Schmitz,D.P.; Pieper,D.H.; Barrantes,I.; ( Year: 2017). Title: Draft Genome Sequence of Streptococcus dysgalactiae subsp. equisimilis Strain C161L1 Isolated in Vellore, India. Journal: Genome Announc. Volume: 5 Issue: 19, S-Page: pii: e00336-17 DOI: 10.1128/genomeA.00336-17 HZI repository PubMed
  • Authors: Itzek,A.; Chen,Z.; Merritt,J.; Kreth,J.; ( Year: 2017). Title: Effect of salivary agglutination on oral streptococcal clearance by human polymorphonuclear neutrophil granulocytes. Journal: Mol.Oral Microbiol. Volume: 32 Issue: 3, S-Page: 197- E-Page: 210 DOI: 10.1111/omi.12164 Fulltext HZI repository PubMed
  • Authors: Duarte,M.; Nielsen,A.; Camarinha-Silva,A.; Vilchez-Vargas,R.; Bruls,T.; Wos-Oxley,M.L.; Jauregui,R.; Pieper,D.H.; ( Year: 2017). Title: Functional soil metagenomics: Elucidation of polycyclic aromatic hydrocarbon degradation potential following 12 years of in situ bioremediation. Journal: Environmental Microbiology Volume: 19 Issue: 8, S-Page: 2992- E-Page: 3011 DOI: 10.1111/1462-2920.13756 HZI repository PubMed
  • Authors: Amitay,E.L.; Werner,S.; Vital,M.; Pieper,D.H.; Hofler,D.; Gierse,I.J.; Butt,J.; Balavarca,Y.; Cuk,K.; Brenner,H.; ( Year: 2017). Title: Fusobacterium and colorectal cancer: Causal factor or passenger? Results from a large colorectal cancer screening study. Journal: Carcinogenesis Volume: 38 Issue: 8, S-Page: 781- E-Page: 788 DOI: 10.1093/carcin/bgx053 PubMed
  • Authors: Camarinha-Silva,A.; Maushammer,M.; Wellmann,R.; Vital,M.; Preuss,S.; Bennewitz,J.; ( Year: 2017). Title: Host genome influence on gut microbial composition and microbial prediction of complex traits in pigs. Journal: Genetics Volume: 206 Issue: 3, S-Page: 1637- E-Page: 1644 DOI: 10.1534/genetics.117.200782 HZI repository PubMed
  • Authors: Heidrich,B.; Vital,M.; Plumeier,I.; Doscher,N.; Kahl,S.; Kirschner,J.; Ziegert,S.; Solbach,P.; Lenzen,H.; Potthoff,A.; Manns,M.P.; Wedemeyer,H.; Pieper,D.H.; ( Year: 2017). Title: Intestinal microbiota in patients with chronic hepatitis C with and without liver cirrhosis compared to healthy controls. Journal: Liver Int. Volume: 38 Issue: 1, S-Page: 50- E-Page: 58 DOI: 10.1111/liv.13485 PubMed
  • Authors: Truchado,P.; Hernandez-Sanabria,E.; Salden,B.N.; Van den Abbeele,P.; Vilchez-Vargas,R.; Jauregui,R.; Pieper,D.H.; Possemiers,S.; Van De Wiele,T.; ( Year: 2017). Title: Long chain arabinoxylans shift the mucosa-associated microbiota in the proximal colon of the simulator of the human intestinal microbial ecosystem (M-SHIME). Journal: J.Funct.Foods Volume: 32, S-Page: 226- E-Page: 237 DOI: 10.1016/j.jff.2017.02.004 HZI repository WEBURLS
  • Authors: Babbar,A.; Kumar,V.N.; Bergmann,R.; Barrantes,I.; Pieper,D.H.; Itzek,A.; Nitsche-Schmitz,D.P.; ( Year: 2017). Title: Members of a new subgroup of Streptococcus anginosus harbor virulence related genes previously observed in Streptococcus pyogenes. Journal: International Journal of Medical Microbiology Volume: 307 Issue: 3, S-Page: 174- E-Page: 181 DOI: 10.1016/j.ijmm.2017.02.002 HZI repository PubMed
  • Authors: Adam,I.K.U.; Duarte,M.; Pathmanathan,J.; Miltner,A.; Brüls,T.; Kästner,M.; ( Year: 2017). Title: Microbial communities in pyrene amended soil-compost mixture and fertilized soil. Journal: AMB Express Volume: 7 Issue: 1, S-Page: Article number 7 DOI: 10.1186/s13568-016-0306-9 HZI repository PubMed
  • Authors: Ruiz,A.; Cerdó,T.; Jauregui,R.; Pieper,D.H.; Marcos,A.; Clemente,A.; Garcia,F.; Margolles,A.; Ferrer,M.; Campoy,C.; Suárez,A.; ( Year: 2017). Title: One-year calorie restriction impacts gut microbial composition but not its metabolic performance in obese adolescents. Journal: Environmental Microbiology Volume: 19 Issue: 4, S-Page: 1536- E-Page: 1551 DOI: 10.1111/1462-2920.13713 HZI repository PubMed
  • Authors: Gottschick,C.; Deng,Z.L.; Vital,M.; Masur,C.; Abels,C.; Pieper,D.H.; Wagner-Döbler,I.; ( Year: 2017). Title: The urinary microbiota of men and women and its changes in women during bacterial vaginosis and antibiotic treatment. Journal: Microbiome. Volume: 5 Issue: 1, S-Page: 99 DOI: 10.1186/s40168-017-0305-3 HZI repository PubMed
  • Authors: Gottschick,C.; Deng,Z.L.; Vital,M.; Masur,C.; Abels,C.; Pieper,D.H.; Rohde,M.; Mendling,W.; Wagner-Döbler,I.; ( Year: 2017). Title: Treatment of biofilms in bacterial vaginosis by an amphoteric tenside pessary-clinical study and microbiota analysis. Journal: Microbiome. Volume: 5 Issue: 1, S-Page: 119 DOI: 10.1186/s40168-017-0326-y HZI repository PubMed
  • Authors: Rath,S.; Heidrich,B.; Pieper,D.H.; Vital,M.; ( Year: 2017). Title: Uncovering the trimethylamine-producing bacteria of the human gut microbiota. Journal: Microbiome. Volume: 5 Issue: 1, S-Page: 54 DOI: 10.1186/s40168-017-0271-9 HZI repository PubMed
  • Authors: Van den Bossche,L.; Hindryckx,P.; Devisscher,L.; Devriese,S.; Van Welden,S.; Holvoet,T.; Vilchez-Vargas,R.; Vital,M.; Pieper,D.H.; Bussche,J.V.; Vanhaecke,L.; Van De Wiele,T.; De Vos,M.; Laukens,D.; ( Year: 2017). Title: Ursodeoxycholic acid and its taurine- or glycine-conjugated species reduce colitogenic dysbiosis and equally suppress experimental colitis in mice. Journal: Appl.Environ.Microbiol. Volume: 83 Issue: 7, S-Page: e02766-16 DOI: 10.1128/AEM.02766-16 HZI repository PubMed
  • Authors: Oxley,A.P.A.; Catalano,S.R.; Wos-Oxley,M.L.; Westlake,E.L.; Grammer,G.L.; Steer,M.A.; ( Year: 2017). Title: Using in situ hybridisation to expand the Daily Egg Production Method (DEPM) to new fish species. Journal: Mol.Ecol.Resour. Volume: 17 Issue: 6, S-Page: 1108- E-Page: 1121 DOI: 10.1111/1755-0998.12707 PubMed
  • Authors: Witte,T.; Pieper,D.H.; Heidrich,B.; ( Year: 2017). Title: [Intestinal microbiota in individualized therapies]. Journal: Internist (Berl) DOI: 10.1007/s00108-017-0259-3 PubMed
  • Authors: Courtens,E.N.; Spieck,E.; Vilchez-Vargas,R.; Bode,S.; Boeckx,P.; Schouten,S.; Jauregui,R.; Pieper,D.H.; Vlaeminck,S.E.; Boon,N.; ( Year: 2016). Title: A robust nitrifying community in a bioreactor at 50 degrees C opens up the path for thermophilic nitrogen removal. Journal: ISME J Volume: 10 Issue: 9, S-Page: 2293- E-Page: 2303 DOI: 10.1038/ismej.2016.8 Fulltext HZI repository PubMed
  • Authors: Yakimov,M.M.; Crisafi,F.; Messina,E.; Smedile,F.; Lopatina,A.; Denaro,R.; Pieper,D.H.; Golyshin,P.N.; Giuliano,L.; ( Year: 2016). Title: Analysis of defence systems and a conjugative IncP-1 plasmid in the marine polyaromatic hydrocarbons-degrading bacterium Cycloclasticus sp. 78-ME. Journal: Environ.Microbiol.Rep. Volume: 8 Issue: 4, S-Page: 508- E-Page: 519 DOI: 10.1111/1758-2229.12424 HZI repository PubMed
  • Authors: Milici,M.; Tomasch,J.; Wos-Oxley,M.L.; Decelle,J.; Jauregui,R.; Wang,H.; Deng,Z.L.; Plumeier,I.; Giebel,H.A.; Badewien,T.H.; Wurst,M.; Pieper,D.H.; Simon,M.; Wagner-Döbler,I.; ( Year: 2016). Title: Bacterioplankton Biogeography of the Atlantic Ocean: A Case Study of the Distance-Decay Relationship. Journal: Front Microbiol. Volume: 7, S-Page: 590 DOI: 10.3389/fmicb.2016.00590 HZI repository PubMed
  • Authors: Verstraelen,H.; Vilchez-Vargas,R.; Desimpel,F.; Jauregui,R.; Vankeirsbilck,N.; Weyers,S.; Verhelst,R.; De,Sutter P.; Pieper,D.H.; Van de,Wiele T.; ( Year: 2016). Title: Characterisation of the human uterine microbiome in non-pregnant women through deep sequencing of the V1-2 region of the 16S rRNA gene. Journal: PeerJ Volume: 4, S-Page: e1602 DOI: 10.7717/peerj.1602 HZI repository PubMed
  • Authors: Milici,M.; Deng,Z.L.; Tomasch,J.; Decelle,J.; Wos-Oxley,M.L.; Wang,H.; Jauregui,R.; Plumeier,I.; Giebel,H.A.; Badewien,T.H.; Wurst,M.; Pieper,D.H.; Simon,M.; Wagner-Döbler,I.; ( Year: 2016). Title: Co-occurrence Analysis of Microbial Taxa in the Atlantic Ocean Reveals High Connectivity in the Free-Living Bacterioplankton. Journal: Front Microbiol. Volume: 7, S-Page: 649 DOI: 10.3389/fmicb.2016.00649 HZI repository PubMed
  • Authors: Giuliani,C.; Marzorati,M.; Innocenti,M.; Vilchez-Vargas,R.; Vital,M.; Pieper,D.H.; Van de,Wiele T.; Mulinacci,N.; ( Year: 2016). Title: Dietary supplement based on stilbenes: a focus on gut microbial metabolism by the in vitro simulator M-SHIME(R). Journal: Food Funct. Volume: 7 Issue: 11, S-Page: 4564- E-Page: 4575 PubMed
  • Authors: Ehsani,E.; Barrantes,I.; Vandermaesen,J.; Geffers,R.; Jarek,M.; Boon,N.; Springael,D.; Pieper,D.H.; Vilchez-Vargas,R.; ( Year: 2016). Title: Draft Genome Sequence of Aeromonas sp. Strain EERV15. Journal: Genome Announc. Volume: 4 Issue: 4, S-Page: e00811-16 DOI: 10.1128/genomeA.00811-16 HZI repository PubMed
  • Authors: Galvez,E.J.; Carrillo-Castro,K.; Zarate,L.; Guiza,L.; Pieper,D.H.; Garcia-Bonilla,E.; Salazar,M.; Junca,H.; ( Year: 2016). Title: Draft Genome Sequence of Bacillus licheniformis CG-B52, a Highly Virulent Bacterium of Pacific White Shrimp (Litopenaeus vannamei), Isolated from a Colombian Caribbean Aquaculture Outbreak. Journal: Genome Announc. Volume: 4 Issue: 3 DOI: 10.1128/genomeA.00321-16 HZI repository PubMed
  • Authors: Puente-Sanchez,F.; Pieper,D.H.; Arce-Rodriguez,A.; ( Year: 2016). Title: Draft Genome Sequence of the Deep-Subsurface Actinobacterium Tessaracoccus lapidicaptus IPBSL-7T. Journal: Genome Announc. Volume: 4 Issue: 5, S-Page: e01078-16 DOI: 10.1128/genomeA.01078-16. HZI repository PubMed
  • Authors: Korsch,M.; Marten,S.M.; Dötsch,A.; Jauregui,R.; Pieper,D.H.; Obst,U.; ( Year: 2016). Title: Effect of dental cements on peri-implant microbial community: comparison of the microbial communities inhabiting the peri-implant tissue when using different luting cements. Journal: Clin.Oral Implants Res. Volume: 27 Issue: 12, S-Page: e161- E-Page: e166 DOI: 10.1111/clr.12582 HZI repository PubMed
  • Authors: Courtens,E.N.P.; Vandekerckhove,T.; Prat,D.; Vilchez-Vargas,R.; Vital,M.; Pieper,D.H.; Meerbergen,K.; Lievens,B.; Boon,N.; Vlaeminck,S.E.; ( Year: 2016). Title: Empowering a mesophilic inoculum for thermophilic nitrification: Growth mode and temperature pattern as critical proliferation factors for archaeal ammonia oxidizers. Journal: Water Res. Volume: 92, S-Page: 94- E-Page: 103 DOI: 10.1016/j.watres.2016.01.022 HZI repository PubMed
  • Authors: Wos-Oxley,M.L.; Chaves-Moreno,D.; Jauregui,R.; Oxley,A.P.; Kaspar,U.; Plumeier,I.; Kahl,S.; Rudack,C.; Becker,K.; Pieper,D.H.; ( Year: 2016). Title: Exploring the bacterial assemblages along the human nasal passage. Journal: Environmental Microbiology Volume: 18 Issue: 7, S-Page: 2259- E-Page: 2271 DOI: 10.1111/1462-2920.13378 HZI repository PubMed
  • Authors: Chaves-Moreno,D.; Wos-Oxley,M.L.; Jauregui,R.; Medina,E.; Oxley,A.P.; Pieper,D.H.; ( Year: 2016). Title: Exploring the transcriptome of Staphylococcus aureus in its natural niche. Journal: Sci Rep. Volume: 6, S-Page: 33174 DOI: 10.1038/srep33174 HZI repository PubMed
  • Authors: Stallmach,A.; Lange,K.; Buening,J.; Sina,C.; Vital,M.; Pieper,D.H.; ( Year: 2016). Title: Fecal Microbiota Transfer in Patients With Chronic Antibiotic-Refractory Pouchitis. Journal: Am J Gastroenterol. Volume: 111 Issue: 3, S-Page: 441- E-Page: 443 DOI: 10.1038/ajg.2015.436 PubMed
  • Authors: Heidrich,B.; Steinmann,E.; Plumeier,I.; Kirschner,J.; Sollik,L.; Ziegert,S.; Engelmann,M.; Lehmann,P.; Manns,M.P.; Pieper,D.H.; Wedemeyer,H.; ( Year: 2016). Title: Frequent detection of HCV RNA and HCVcoreAg in stool of patients with chronic hepatitis C. Journal: J.Clin.Virol. Volume: 80, S-Page: 1- E-Page: 7 DOI: 10.1016/j.jcv.2016.04.006 PubMed
  • Authors: Marzorati,M.; Vilchez-Vargas,R.; Bussche,J.V.; Truchado,P.; Jauregui,R.; Hage,R.A.; Pieper,D.H.; Vanhaecke,L.; De Wiele,T.V.; ( Year: 2016). Title: High-fiber and high-protein diets shape different gut microbial communities, which ecologically behave similarly under stress conditions, as shown in a gastrointestinal simulator. Journal: Mol.Nutr.Food Res Volume: 61 Issue: 1 DOI: 10.1002/mnfr.201600150 HZI repository PubMed
  • Authors: Meerburg,F.A.; Vlaeminck,S.E.; Roume,H.; Seuntjens,D.; Pieper,D.H.; Jauregui,R.; Vilchez-Vargas,R.; Boon,N.; ( Year: 2016). Title: High-rate activated sludge communities have a distinctly different structure compared to low-rate sludge communities, and are less sensitive towards environmental and operational variables. Journal: Water Res Volume: 100, S-Page: 137- E-Page: 145 DOI: 10.1016/j.watres.2016.04.076 HZI repository PubMed
  • Authors: Van,Herreweghen F.; Van den,Abbeele P.; De,Mulder T.; De,Weirdt R.; Geirnaert,A.; Hernandez-Sanabria,E.; Vilchez-Vargas,R.; Jauregui,R.; Pieper,D.H.; Belzer,C.; de Vos,W.M.; Van de,Wiele T.; ( Year: 2016). Title: In vitro colonisation of the distal colon by Akkermansia muciniphila is largely mucin and pH dependent. Journal: Benef.Microbes Volume: 8 Issue: 1, S-Page: 81- E-Page: 96 DOI: 10.3920/BM2016.0013 HZI repository PubMed
  • Authors: Borda-Molina,D.; Vital,M.; Sommerfeld,V.; Rodehutscord,M.; Camarinha-Silva,A.; ( Year: 2016). Title: Insights into broilers' gut microbiota fed with phosphorus, calcium, and phytase supplemented diets. Journal: Front.Microbiol. Volume: 7 Issue: DEC, S-Page: Article number 2033 DOI: 10.3389/fmicb.2016.02033 HZI repository PubMed
  • Authors: Lima-Morales,D.; Jauregui,R.; Camarinha-Silva,A.; Geffers,R.; Pieper,D.H.; Vilchez-Vargas,R.; ( Year: 2016). Title: Linking microbial community and catabolic gene structures during the adaptation of three contaminated soils under continuous long term pollutant stress. Journal: Appl.Environ.Microbiol. Volume: 82 Issue: 7, S-Page: 2227- E-Page: 2237 DOI: 10.1128/AEM.03482-15 HZI repository PubMed
  • Authors: Milici,M.; Tomasch,J.; Wos-Oxley,M.L.; Wang,H.; Jauregui,R.; Camarinha-Silva,A.; Deng,Z.L.; Plumeier,I.; Giebel,H.A.; Wurst,M.; Pieper,D.H.; Simon,M.; Wagner-Döbler,I.; ( Year: 2016). Title: Low diversity of planktonic bacteria in the tropical ocean. Journal: Sci.Rep. Volume: 6, S-Page: 1- E-Page: 9 DOI: 10.1038/srep19054 HZI repository PubMed
  • Authors: Grunert,O.; Hernandez-Sanabria,E.; Vilchez-Vargas,R.; Jauregui,R.; Pieper,D.H.; Perneel,M.; Van Labeke,M.C.; Reheul,D.; Boon,N.; ( Year: 2016). Title: Mineral and organic growing media have distinct community structure, stability and functionality in soilless culture systems. Journal: Sci.Rep. Volume: 6, S-Page: Article number 18837 DOI: 10.1038/srep18837 HZI repository PubMed
  • Authors: De,Weirdt R.; Hernandez-Sanabria,E.; Fievez,V.; Mees,E.; Geirnaert,A.; Van,Herreweghen F.; Vilchez-Vargas,R.; Van den,Abbeele P.; Jauregui,R.; Pieper,D.H.; Vlaeminck,B.; Van de,Wiele T.; ( Year: 2016). Title: Mucosa-associated biohydrogenating microbes protect the simulated colon microbiome from stress associated with high concentrations of poly-unsaturated fat. Journal: Environmental Microbiology Volume: 19 Issue: 2, S-Page: 722- E-Page: 739 DOI: 10.1111/1462-2920.13622 HZI repository PubMed
  • Authors: Maes,S.; Props,R.; Fitts,J.P.; Smet,R.D.; Vilchez-Vargas,R.; Vital,M.; Pieper,D.H.; Vanhaecke,F.; Boon,N.; Hennebel,T.; ( Year: 2016). Title: Platinum Recovery from Synthetic Extreme Environments by Halophilic Bacteria. Journal: Environ.Sci Technol. Volume: 50 Issue: 5, S-Page: 2619- E-Page: 2626 PubMed
  • Authors: De Vrieze,J.; Regueiro,L.; Props,R.; Vilchez-Vargas,R.; Jauregui,R.; Pieper,D.H.; Lema,J.M.; Carballa,M.; ( Year: 2016). Title: Presence does not imply activity: DNA and RNA patterns differ in response to salt perturbation in anaerobic digestion. Journal: Biotechnol.Biofuels. Volume: 9, S-Page: 244 DOI: 10.1186/s13068-016-0652-5 HZI repository PubMed
  • Authors: Arce-Rodriguez,A.; Puente-Sanchez,F.; Avendano,R.; Libby,E.; Rojas,L.; Cambronero,J.C.; Pieper,D.H.; Timmis,K.N.; Chavarria,M.; ( Year: 2016). Title: Pristine but metal-rich Rio Sucio (Dirty River) is dominated by Gallionella and other iron-sulfur oxidizing microbes. Journal: Extremophiles Volume: 21 Issue: 2, S-Page: 235- E-Page: 243 DOI: 10.1007/s00792-016-0898-7 HZI repository PubMed
  • Authors: Coma,M.; Vilchez-Vargas,R.; Roume,H.; Jauregui,R.; Pieper,D.H.; Rabaey,K.; ( Year: 2016). Title: Product Diversity Linked to Substrate Usage in Chain Elongation by Mixed-Culture Fermentation. Journal: Environ.Sci.Technol. Volume: 50 Issue: 12, S-Page: 6467- E-Page: 6476 DOI: 10.1021/acs.est.5b06021 PubMed
  • Authors: Salden,B.N.; Troost,F.J.; Wilms,E.; Truchado,P.; Vilchez-Vargas,R.; Pieper,D.H.; Jáuregui,R.; Marzorati,M.; Van De Wiele,T.; Possemiers,S.; Masclee,A.A.; ( Year: 2016). Title: Reinforcement of intestinal epithelial barrier by arabinoxylans in overweight and obese subjects: A randomized controlled trial. Arabinoxylans in gut barrier. Journal: Clin.Nutr. DOI: 10.1016/j.clnu.2017.01.024 PubMed
  • Authors: Schulz,C.; Schutte,K.; Kropf,S.; Schmitt,F.C.; Vasapolli,R.; Kliegis,L.M.; Riegger,A.; Malfertheiner,P.; ( Year: 2016). Title: RiMINI - the influence of rifaximin on minimal hepatic encephalopathy (MHE) and on the intestinal microbiome in patients with liver cirrhosis: Study protocol for a randomized controlled trial. Journal: Trials Volume: 17 Issue: 1, S-Page: 111 DOI: 10.1186/s13063-016-1205-8 HZI repository PubMed
  • Authors: Medina,E.; Pieper,D.H.; ( Year: 2016). Title: Tackling Threats and Future Problems of Multidrug-Resistant Bacteria. Journal: Curr Top.Microbiol.Immunol. Volume: 398, S-Page: 3- E-Page: 34 PubMed
  • Authors: Schulz,C.; Schutte,K.; Koch,N.; Vilchez-Vargas,R.; Wos-Oxley,M.L.; Oxley,A.P.; Vital,M.; Malfertheiner,P.; Pieper,D.H.; ( Year: 2016). Title: The active bacterial assemblages of the upper GI tract in individuals with and without Helicobacter infection. Journal: GUT Volume: 67 Issue: 2, S-Page: 216- E-Page: 225 DOI: 10.1136/gutjnl-2016-312904 HZI repository PubMed
  • Authors: Kaspar,U.; Kriegeskorte,A.; Schubert,T.; Peters,G.; Rudack,C.; Pieper,D.H.; Wos-Oxley,M.; Becker,K.; ( Year: 2016). Title: The culturome of the human nose habitats reveals individual bacterial fingerprint patterns. Journal: Environmental Microbiology Volume: 18 Issue: 7, S-Page: 2130- E-Page: 2142 DOI: 10.1111/1462-2920.12891 HZI repository PubMed
  • Authors: De Vrieze,J.; Raport,L.; Roume,H.; Vilchez-Vargas,R.; Jáuregui,R.; Pieper,D.H.; Boon,N.; ( Year: 2016). Title: The full-scale anaerobic digestion microbiome is represented by specific marker populations. Journal: Water Res. Volume: 104, S-Page: 101- E-Page: 110 DOI: 10.1016/j.watres.2016.08.008 PubMed
  • Authors: Lassek,C.; Burghartz,M.; Chaves-Moreno,D.; Otto,A.; Hentschker,C.; Fuchs,S.; Bernhardt,J.; Jauregui,R.; Neubauer,R.; Becher,D.; Pieper,D.H.; Jahn,M.; Jahn,D.; Riedel,K.; ( Year: 2015). Title: A metaproteomics approach to elucidate host and pathogen protein expression during catheter-associated urinary tract infections (CAUTIs). Journal: Mol.Cell.Proteomics Volume: 14 Issue: 4, S-Page: 989- E-Page: 1008 DOI: 10.1074/mcp.M114.043463 HZI repository PubMed
  • Authors: Vital,M.; Harkema,J.R.; Rizzo,M.; Tiedje,J.; Brandenberger,C.; ( Year: 2015). Title: Alterations of the Murine Gut Microbiome with Age and Allergic Airway Disease. Journal: J Immunol.Res Volume: 2015, S-Page: 892568 DOI: 10.1155/2015/892568 HZI repository PubMed
  • Authors: Kümmel,S.; Herbst,F.A.; Bahr,A.; Duarte,M.; Pieper,D.H.; Jehmlich,N.; Seifert,J.; von Bergen,M.; Bombach,P.; Richnow,H.H.; Vogt,C.; ( Year: 2015). Title: Anaerobic naphthalene degradation by sulfatereducing Desulfobacteraceae from various anoxic aquifers. Journal: Fems Microbiology Ecology Volume: 91 Issue: 3 DOI: 10.1093/femsec/fiv006 HZI repository PubMed
  • Authors: Chaves-Moreno,D.; Wos-Oxley,M.L.; Jauregui,R.; Medina,E.; Oxley,A.P.; Pieper,D.H.; ( Year: 2015). Title: Application of a Novel "Pan-Genome"-Based Strategy for Assigning RNAseq Transcript Reads to Staphylococcus aureus Strains. Journal: PLoS ONE Volume: 10 Issue: 12, S-Page: e0145861 DOI: 10.1371/journal.pone.0145861 HZI repository PubMed
  • Authors: Lopez-Fernandez,M.; Cherkouk,A.; Vilchez-Vargas,R.; Jauregui,R.; Pieper,D.; Boon,N.; Sanchez-Castro,I.; Merroun,M.L.; ( Year: 2015). Title: Bacterial Diversity in Bentonites, Engineered Barrier for Deep Geological Disposal of Radioactive Wastes. Journal: Microb.Ecol. Volume: 70 Issue: 4, S-Page: 922- E-Page: 935 DOI: 10.1007/s00248-015-0630-7 HZI repository PubMed
  • Authors: Fiebig,A.; Loof,T.G.; Babbar,A.; Itzek,A.; Koehorst,J.J.; Schaap,P.J.; Nitsche-Schmitz,D.P.; ( Year: 2015). Title: Comparative Genomics of Streptococcus pyogenes M1 isolates differing in virulence and propensity to cause systemic infection in mice. Journal: International Journal of Medical Microbiology Volume: 305 Issue: 6, S-Page: 532- E-Page: 543 WEBURLS
  • Authors: Ben,Hania W.; Joseph,M.; Schumann,P.; Bunk,B.; Fiebig,A.; Sproer,C.; Klenk,H.P.; Fardeau,M.L.; Spring,S.; ( Year: 2015). Title: Complete genome sequence and description of Salinispira pacifica gen. nov., sp. nov., a novel spirochaete isolated form a hypersaline microbial mat. Journal: Stand.Genomic Sci Volume: 10, S-Page: 7 DOI: 10.1186/1944-3277-10-7 HZI repository PubMed
  • Authors: de Lima-Morales,D.; Chaves-Moreno,D.; Wos-Oxley,M.L.; Jauregui,R.; Vilchez-Vargas,R.; Pieper,D.H.; ( Year: 2015). Title: Degradation of benzene by Pseudomonas veronii 1YdBTEX2 and 1YB2 is catalyzed by enzymes encoded in distinct catabolic gene clusters. Journal: Appl.Environ.Microbiol. Volume: 82, S-Page: 167- E-Page: 173 DOI: 10.1128/AEM.03026-15 HZI repository PubMed
  • Authors: Ehsani,E.; Jauregui,R.; Geffers,R.; Jareck,M.; Boon,N.; Pieper,D.H.; Vilchez-Vargas,R.; ( Year: 2015). Title: Draft Genome Sequence of Rhodococcus sp. Strain 311R. Journal: Genome Announc. Volume: 3 Issue: 3 DOI: 10.1128/genomeA.00378-15. HZI repository PubMed
  • Authors: Burbach,K.; Seifert,J.; Pieper,D.H.; Camarinha-Silva,A.; ( Year: 2015). Title: Evaluation of DNA extraction kits and phylogenetic diversity of the porcine gastrointestinal tract based on Illumina sequencing of two hypervariable regions. Journal: Microbiologyopen. Volume: 5, S-Page: 70- E-Page: 82 DOI: 10.1002/mbo3.312 HZI repository PubMed
  • Authors: Ehsani,E.; Jauregui,R.; Geffers,R.; Jarek,M.; Boon,N.; Pieper,D.H.; Vilchez-Vargas,R.; ( Year: 2015). Title: First Draft Genome Sequence of the Acidovorax caeni sp. nov. Type Strain R-24608 (DSM 19327). Journal: Genome Announc. Volume: 3 Issue: 6 PubMed
  • Authors: Lau,S.C.K.; Riedel,T.; Fiebig,A.; Han,J.; Huntemann,M.; Petersen,J.; Ivanova,N.N.; Markowitz,V.; Woyke,T.; Göker,M.; Kyrpides,N.C.; Klenk,H.P.; Qian,P.Y.; ( Year: 2015). Title: Genome sequence of the pink-pigmented marine bacterium Loktanella hongkongensis type strain (UST950701û009PT), a representative of the Roseobacter group. Journal: Standards in Genomic Sciences Volume: 10 Issue: AUGUST2015 DOI: 10.1186/s40793-015-0050-9 HZI repository PubMed
  • Authors: Riedel,T.; Spring,S.; Fiebig,A.; Scheuner,C.; Petersen,J.; Goker,M.; Klenk,H.P.; ( Year: 2015). Title: Genome sequence of the Roseovarius mucosus type strain (DSM 17069(T)), a bacteriochlorophyll a-containing representative of the marine Roseobacter group isolated from the dinoflagellate Alexandrium ostenfeldii. Journal: Stand.Genomic Sci Volume: 10, S-Page: 17 DOI: 10.1186/1944-3277-10-17 HZI repository PubMed
  • Authors: Schulz,C.; Koch,N.; Schutte,K.; Pieper,D.H.; Malfertheiner,P.; ( Year: 2015). Title: H. pylori and its modulation of gastrointestinal microbiota. Journal: J Dig.Dis. Volume: 16, S-Page: 109- E-Page: 117 PubMed
  • Authors: Pérez-Pantoj,D.; Leiva-Novoa,P.; Donoso,R.A.; Little,C.; Godoy,M.; Pieper,D.H.; Gonzáleza,B.; ( Year: 2015). Title: Hierarchy of carbon source utilization in soil bacteria: Hegemonic preference for benzoate in complex aromatic compound mixtures degraded by Cupriavidus pinatubonensis strain JMP134. Journal: Appl.Environ.Microbiol. Volume: 81 Issue: 12, S-Page: 3914- E-Page: 3924 WEBURLS
  • Authors: Szafranski,S.P.; Wos-Oxley,M.L.; Vilchez-Vargas,R.; Jauregui,R.; Plumeier,I.; Klawonn,F.; Tomasch,J.; Meisinger,C.; Kühnisch,J.; Sztajer,H.; Pieper,D.H.; Wagner-Döbler,I.; ( Year: 2015). Title: High-resolution taxonomic profiling of the subgingival microbiome for biomarker discovery and periodontitis diagnosis. Journal: Appl.Environ.Microbiol. Volume: 81 Issue: 3, S-Page: 1047- E-Page: 1058 DOI: 10.1128/AEM.03534-14 HZI repository PubMed
  • Authors: Lunsmann,V.; Kappelmeyer,U.; Benndorf,R.; Martinez-Lavanchy,P.M.; Taubert,A.; Adrian,L.; Duarte,M.; Pieper,D.H.; von,Bergen M.; Muller,J.A.; Heipieper,H.J.; Jehmlich,N.; ( Year: 2015). Title: In-situ Protein-SIP highlights Burkholderiaceae as key players degrading toluene by para ring hydroxylation in a constructed wetland model. Journal: Environmental Microbiology Volume: 18 Issue: 4, S-Page: 1176- E-Page: 1186 DOI: 10.1111/1462-2920.13133 PubMed
  • Authors: Martínez-Lavanchy,P.M.; Chen,Z.; Lünsmann,V.; Marin-Cevada,V.; Vilchez-Vargas,R.; Pieper,D.H.; Reiche,N.; Kappelmeyer,U.; Imparato,V.; Junca,H.; Nijenhuis,I.; Müller,J.A.; Kuschk,P.; Heipieper,H.J.; ( Year: 2015). Title: Microbial toluene removal in hypoxic model constructed wetlands occurs predominantly via the ring monooxygenation pathway. Journal: Appl.Environ.Microbiol. Volume: 81 Issue: 18, S-Page: 6241- E-Page: 6252 WEBURLS
  • Authors: Chaves-Moreno,D.; Plumeier,I.; Kahl,S.; Krismer,B.; Peschel,A.; Oxley,A.P.; Jauregui,R.; Pieper,D.H.; ( Year: 2015). Title: The microbial community structure of the cotton rat nose. Journal: Environ.Microbiol.Rep. Volume: 7, S-Page: 929- E-Page: 935 PubMed
  • Authors: Liu,N.; Niu,G.; Xie,Z.; Chen,Z.; Itzek,A.; Kreth,J.; Gillaspy,A.; Zeng,L.; Burne,R.; Qi,F.; Merritt,J.; ( Year: 2015). Title: The Streptococcus mutans irvA Gene Encodes a trans-Acting Riboregulatory mRNA. Journal: Mol.Cell Volume: 57 Issue: 1, S-Page: 179- E-Page: 190 WEBURLS
  • Authors: Jimenez,D.J.; Chaves-Moreno,D.; van Elsas,J.D.; ( Year: 2015). Title: Unveiling the metabolic potential of two soil-derived microbial consortia selected on wheat straw. Journal: Sci Rep. Volume: 5, S-Page: 13845 DOI: 10.1038/srep13845 HZI repository PubMed
  • Authors: Duarte,Márcia; Jauregui,Ruy; Vilchez-Vargas,Ramiro; Junca,Howard*; Pieper,Dietmar H.; ( Year: 2014). Title: AromaDeg, a novel database for phylogenomics of aerobic bacterial degradation of aromatics. Journal: Database.(Oxford) Volume: 2014 DOI: 10.1093/database/bau118 HZI repository PubMed
  • Authors: Camarinha-Silva,A.; Jauregui,R.; Chaves-Moreno,D.; Oxley,A.P.A.; Schaumburg,F.; Becker,K.; Wos,M.L.*; Pieper,D.H.; ( Year: 2014). Title: Comparing the anterior nare bacterial community of two discrete human populations using Illumina amplicon sequencing. Journal: Environmental Microbiology Volume: 16 Issue: 9, S-Page: 2939- E-Page: 2952 DOI: 10.1111/1462-2920.12362 HZI repository PubMed
  • Authors: Xu,Y.; Itzek,A.; Kreth,J.; ( Year: 2014). Title: Comparison of genes required for H2O2 resistance in Streptococcus gordonii and Streptococcus sanguinis. Journal: Microbiology Volume: 160, S-Page: 2627- E-Page: 2638 WEBURLS
  • Authors: Jauregui,Ruy; Rodelas,B.; Geffers,Robert; Boon,N.; Pieper,Dietmar H.; Vilchez-Vargas,Ramiro; ( Year: 2014). Title: Draft Genome Sequence of the Naphthalene Degrader Herbaspirillum sp. Strain RV1423. Journal: Genome Announcement Volume: 2 Issue: 2 PubMed
  • Authors: Szafranska,A.K.; Oxley,A.P.A.; Chaves-Moreno,D.; Horst,S.A.; Roßlenbroich,S.; Peters,G.; Goldmann,O.; Rohd,M.; Sinha,B.; Pieper,D.H.; Löffler,B.; Jauregui,R.; Wos-Oxley,M.L.; Medina,E.; ( Year: 2014). Title: High-resolution transcriptomic analysis of the adaptive response of staphylococcus aureus during acute and chronic phases of osteomyelitis. Journal: MBio Volume: 5 Issue: 6, S-Page: e01775 DOI: 10.1128/mBio.01775-14 HZI repository PubMed
  • Authors: De,Vrieze J.; Gildemyn,S.; Vilchez-Vargas,R.; Jauregui,R.; Pieper,Dietmar H.; Verstraete,W.; Boon,N.; ( Year: 2014). Title: Inoculum selection is crucial to ensure operational stability in anaerobic digestion. Journal: Applied Microbiology and Biotechnology Volume: 99, S-Page: 189- E-Page: 199 PubMed
  • Authors: Mehraj,J.; Akmatov,M.K.; Strömpl,J.; Gatzemeier,A.; Layer,F.; Werner,G.; Pieper,D.H.; Medina,E.; Witte,W.; Pessler,F.; Krause,G.; ( Year: 2014). Title: Methicillin-Sensitive and Methicillin-Resistant Staphylococcus aureus Nasal Carriage in a Random Sample of Non-Hospitalized Adult Population in Northern Germany. Journal: PLoS ONE Volume: 9 Issue: 9, S-Page: e107937 DOI: 10.1371/journal.pone.0107937 HZI repository PubMed
  • Authors: Kerckhof,F.M.; Courtens,E.N.P.; Geirnaert,A.; Hoefman,S.; Ho,A.; Vilchez-Vargas,R.; Pieper,Dietmar H.; Jauregui,Ruy; Vlaeminck,S.E.; Van De Wiele,T.; Vandamme,P.; Heylen,K.; Boon,N.; ( Year: 2014). Title: Optimized cryopreservation of mixed microbial communities for conserved functionality and diversity. Journal: PLoS ONE Volume: 9 Issue: 6, S-Page: e99517 DOI: 10.1371/journal.pone.0099517 HZI repository PubMed
  • Authors: Gomez-Silvan,C.; Vilchez-Vargas,R.; Arevalo,J.; Gomez,M.A.; Gonzalez-Lopez,J.; Pieper,D.H.; Rodelas,B.; ( Year: 2014). Title: Quantitative response of nitrifying and denitrifying communities to environmental variables in a full-scale membrane bioreactor. Journal: Bioresour.Technol. Volume: 169, S-Page: 126- E-Page: 133 PubMed
  • Authors: Courtens,E.N.; Vlaeminck,S.E.; Vilchez-Vargas,Ramiro; Verliefde,A.; Jauregui,Ruy; Pieper,Dietmar H.; Boon,N.; ( Year: 2014). Title: Trade-off between mesophilic and thermophilic denitrification: Rates vs. sludge production, settleability and stability. Journal: Water Research Volume: 63C, S-Page: 234- E-Page: 244 PubMed
  • Authors: Naveen,Kumar,V; van der,Linden M.; Menon,T.; Nitsche-Schmitz,D.Patric; ( Year: 2014). Title: Viridans and bovis group streptococci that cause infective endocarditis in two regions with contrasting epidemiology. Journal: International Journal of Medical Microbiology Volume: 304 Issue: 3-4, S-Page: 262- E-Page: 268 PubMed
  • Authors: Vilchez-Vargas,Ramiro; Geffers,Robert; Suarez-Diez,Maria; Conte,Ianina; Waliczek,Agnes; Kaser,Vanessa S.; Kralova,M.; Junca,H.; Pieper,Dietmar H.; ( Year: 2013). Title: Analysis of the microbial gene landscape and transcriptome for aromatic pollutants and alkane degradation using a novel internally calibrated microarray system. Journal: Environmental Microbiology Volume: 15 Issue: 4, S-Page: 1016- E-Page: 1039 DOI: 10.1126/scitranslmed.3009925 HZI repository PubMed
  • Authors: Schmidt,E.; Mandt,C.; Janssen,D.B.; Pieper,Dietmar H.*; Reineke,W.; ( Year: 2013). Title: Degradation of chloroaromatics: structure and catalytic activities of wild-type chlorocatechol 2,3-dioxygenases and modified ones. Journal: Environmental Microbiology Volume: 15 Issue: 1, S-Page: 183- E-Page: 190 DOI: 10.1111/j.1462-2920.2012.02831.x PubMed
  • Authors: de Lima-Morales,D.; Chaves-Moreno,D.; Jarek,M.; Vilchez-Vargas,R.; Jauregui,R.; Pieper,D.H.; ( Year: 2013). Title: Draft Genome Sequence of Pseudomonas veronii Strain 1YdBTEX2. Journal: Genome Announcement Volume: 1 Issue: 3 DOI: 10.1128/genomeA.00258-13 HZI repository PubMed
  • Authors: Herbst,F.A.; Bahr,A.; Duarte,Márcia; Pieper,Dietmar H.; Richnow,H.H.; von Bergen,M.; Seifert,J.; Bombach,P.; ( Year: 2013). Title: Elucidation of in situ polycyclic aromatic hydrocarbon degradation by functional metaproteomics (protein-SIP). Journal: Proteomics Volume: 13 Issue: 18-19, S-Page: 2910- E-Page: 2920 WEBURLS
  • Authors: de Lorenzo,V; Pieper,Dietmar*; Ramos,J.L.; ( Year: 2013). Title: From the test tube to the environment - and back. Journal: Environmental Microbiology Volume: 15 Issue: 1, S-Page: 6- E-Page: 11 DOI: 10.1111/j.1462-2920.2012.02896.x HZI repository PubMed
  • Authors: Oosterkamp,M.J.; Veuskens,T.; Talarico Saia,F.; Weelink,S.A.B.; Goodwin,L.A.; Daligault,H.E.; Bruce,D.C.; Detter,J.C.; Tapia,R.; Han,C.S.; Land,M.L.; Hauser,L.J.; Langenhoff,A.A.M.; Gerritse,J.; van Berkel,W.J.H.; Pieper,Dietmar H.; Junca,H.; Smidt,H.; Schraa,G.; Davids,M.; Schaap,P.J.; Plugge,C.M.; Stams,A.J.M.; ( Year: 2013). Title: Genome Analysis and Physiological Comparison of Alicycliphilus denitrificans Strains BC and K601T. Journal: PLoS ONE Volume: 8 Issue: 6, S-Page: e66971 WEBURLS
  • Authors: Guazzaroni,M.E.; Herbst,F.A.; Lores,I.; Tamames,J.; Pelaez,A.I.; Lopez-Cortes,N.; Alcaide,M.; Del Pozo,M.V.; Vieites,J.M.; von,Bergen M.; Gallego,J.L.; Bargiela,R.; Lopez-Lopez,A.; Pieper,Dietmar H.*; Rossello-Mora,R.; Sanchez,J.; Seifert,J.; Ferrer,M.; ( Year: 2013). Title: Metaproteogenomic insights beyond bacterial response to naphthalene exposure and bio-stimulation. Journal: ISME Journal Volume: 7 Issue: 1, S-Page: 122- E-Page: 136 DOI: 10.1038/ismej.2012.82 HZI repository PubMed
  • Authors: Alcaide,M.; Tornes,J.; Stogios,P.J.; Xu,X.; Gertler,C.; Di,Leo R.; Bargiela,R.; Lafraya,A.; Guazzaroni,M.E.; Lopez-Cortes,N.; Chernikova,T.N.; Golyshina,O.V.; Nechitaylo,T.Y.; Plumeier,Iris; Pieper,Dietmar H.; Yakimov,M.M.; Savchenko,A.; Golyshin,P.N.; Ferrer,M.; ( Year: 2013). Title: Single residues dictate the co-evolution of dual esterases: MCP hydrolases from the alpha/beta hydrolase family. Journal: Biochemical Journal Volume: 454 Issue: 1, S-Page: 157- E-Page: 166 PubMed
  • Authors: Wos-Oxley,M.; Bleich,A.; Oxley,A.P.; Kahl,S.; Janus,L.; Smoczek,A.; Nahrstedt,H.; Pils,M.; Taudien,S.; Platzer,M.; Hedrich,H.J.; Medina,Eva*; Pieper,Dietmar*; ( Year: 2012). Title: Comparative evaluation of establishing a human gut microbial community within rodent models. Journal: Gut Microbes Volume: 3 Issue: 3 PubMed
  • Authors: Marin,M.; Plumeier,I.; Pieper,Dietmar H.*; ( Year: 2012). Title: Degradation of 2,3-dihydroxybenzoate by a novel meta-cleavage pathway. Journal: Journal of Bacteriology Volume: 194 Issue: 15, S-Page: 3851- E-Page: 3860 DOI: 10.1128/JB.00430-12 HZI repository PubMed
  • Authors: Ferrer,M.; Ghazi,A.; Beloqui,A.; Vieites,J.M.; López-Cortés,N.; Marin-Navarro,J.; Nechitaylo,T.Y.; Guazzaroni,M.-E.; Polaina,J.; Waliczek,A.*; Chernikova,T.N.; Reva,O.N.; Golyshina,O.V.; Golyshin,P.N.; ( Year: 2012). Title: Functional metagenomics unveils a multifunctional glycosyl hydrolase from the family 43 catalysing the breakdown of plant polymers in the calf rumen. Journal: PLoS ONE Volume: 7 Issue: 6, S-Page: e38134 DOI: 10.1371/journal.pone.0038134 HZI repository PubMed
  • Authors: Perez-Pantoja,D.; Donoso,R.; Agullo,L.; Cordova,M.; Seeger,M.; Pieper,Dietmar H.*; Gonzalez,B.; ( Year: 2012). Title: Genomic analysis of the potential for aromatic compounds biodegradation in Burkholderiales. Journal: Environmental Microbiology Volume: 14 Issue: 5, S-Page: 1091- E-Page: 1117 DOI: 10.1111/j.1462-2920.2011.02613.x HZI repository PubMed
  • Authors: Del Pozo,M.V.; Fernandez-Arrojo,L.; Gil-Martinez,J.; Montesinos,A.; Chernikova,T.N.; Nechitaylo,T.Y.; Waliszek,A.*; Tortajada,M.; Rojas,A.; Huws,S.A.; Golyshina,O.V.; Newbold,C.J.; Polaina,J.; Ferrer,M.; Golyshin,P.N.; ( Year: 2012). Title: Microbial beta-glucosidases from cow rumen metagenome enhance the saccharification of lignocellulose in combination with commercial cellulase cocktail. Journal: Biotechnology for Biofuels Volume: 5 Issue: 1, S-Page: 73 DOI: 10.1186/1754-6834-5-73 HZI repository PubMed
  • Authors: Buchler,G.; Wos-Oxley,M.L.; Smoczek,A.; Zschemisch,N.H.; Neumann,D.; Pieper,Dietmar H.*; Hedrich,H.J.; Bleich,A.; ( Year: 2012). Title: Strain-specific colitis susceptibility in IL10-deficient mice depends on complex gut microbiota-host interactions. Journal: Inflammatory Bowel Diseases Volume: 18 Issue: 5, S-Page: 943- E-Page: 954 PubMed
  • Authors: Camarinha-Silva,A.; Jáuregui,R.; Pieper,Dietmar H.*; Wos-Oxley,M.L.; ( Year: 2012). Title: The temporal dynamics of bacterial communities across human anterior nares. Journal: Environmental Microbiology Reports Volume: 4 Issue: 1, S-Page: 126- E-Page: 132
  • Authors: Camarinha-Silva,A.; Wos-Oxley,M.L.; Jauregui,R.; Becker,K.; Pieper,Dietmar H.; ( Year: 2012). Title: Validating T-RFLP as a sensitive and high-throughput approach to assess bacterial diversity patterns in human anterior nares. Journal: Fems Microbiology Ecology Volume: 79 Issue: 1, S-Page: 98- E-Page: 108 PubMed
  • Authors: Becker,K.; Mutter,W.; Daniel,R.; Rudack,C.; Peschel,A.; Pieper,Dietmar*; ( Year: 2011). Title: Bakterielle Untermieter in der menschlichen Nase. Journal: GenomXPress
  • Authors: Vilchez,Ramiro*; Gomez-Silvan,C.; Purswani,J.; Gonzalez-Lopez,J.; Rodelas,B.; ( Year: 2011). Title: Characterization of bacterial communities exposed to Cr(III) and Pb(II) in submerged fixed-bed biofilms for groundwater treatment. Journal: Ecotoxicology Volume: 20 Issue: 4, S-Page: 779- E-Page: 792 DOI: 10.1007/s10646-011-0629-x HZI repository PubMed
  • Authors: Oosterkamp,M.J.; Veuskens,T.; Plugge,C.M.; Langenhoff,A.A.; Gerritse,J.; van Berkel,W.J.; Pieper,Dietmar H.*; Junca,H.; Goodwin,L.A.; Daligault,H.E.; Bruce,D.C.; Detter,J.C.; Tapia,R.; Han,C.S.; Land,M.L.; Hauser,L.J.; Smidt,H.; Stams,A.J.; ( Year: 2011). Title: Genome sequences of Alicycliphilus denitrificans strains BC and K601T. Journal: Journal of Bacteriology Volume: 193 Issue: 18, S-Page: 5028- E-Page: 5029 DOI: 10.1128/JB.00365-11 HZI repository PubMed
  • Authors: Masoudi-Nejad,A.; Movahedi,S.; Jauregui,R.*; ( Year: 2011). Title: Genome-scale computational analysis of DNA curvature and repeats in Arabidopsis and rice uncovers plant-specific genomic properties1. Journal: BMC GENOMICS Volume: 12, S-Page: 214 PubMed
  • Authors: Duarte,M.; Ferreira-da-Silva,F.; Lünsdorf,H.; Junca,H.; Gales,L.; Pieper,D.H.; Nunes,O.C.; ( Year: 2011). Title: Gulosibacter molinativorax ON4T molinate hydrolase, a novel cobalt-dependent amidohydrolase. Journal: Journal of Bacteriology Volume: 193 Issue: 20, S-Page: 5810- E-Page: 5816 DOI: 10.1128/JB.05054-11 HZI repository PubMed
  • Authors: Pfingsten-Würzburg,S.; Pieper,Dietmar*; Bautsch,W.; Probst-Kepper,M.; ( Year: 2011). Title: Prevalence and molecular epidemiology of meticillin-resistant Staphylococcus aureus in nursing home residents in northern Germeny. Journal: Journal of Hospital Infection Volume: 78 Issue: 2, S-Page: 108- E-Page: 112
  • Authors: Burkhart,J.L.; Müller,Rolf*; Kazmaier,U.; ( Year: 2011). Title: Synthesis and evaluation of simplified pretubulysin analogues. Journal: European Journal of Organic Chemistry Volume: 2011 Issue: 16, S-Page: 3050- E-Page: 3059
  • Authors: Wos-Oxley,M.L.; Plumeier,I.; von,Eiff C.; Taudien,S.; Platzer,M.; Vilchez-Vargas,R.; Becker,K.; Pieper,Dietmar H.*; ( Year: 2010). Title: A poke into the diversity and associations within human anterior nare microbial communities. Journal: ISME Journal Volume: 4 Issue: 7, S-Page: 839- E-Page: 851 PubMed
  • Authors: Gomes,N.C.; Flocco,C.G.; Costa,R.; Junca,H.; Vilchez,R.; Pieper,Dietmar H.*; Krogerrecklenfort,E.; Paranhos,R.; Mendonca-Hagler,L.C.; Smalla,K.; ( Year: 2010). Title: Mangrove microniches determine the structural and functional diversity of enriched petroleum hydrocarbon-degrading consortia. Journal: Fems Microbiology Ecology Volume: 74 Issue: 2, S-Page: 276- E-Page: 290 PubMed
  • Authors: Vilchez-Vargas,R.; Junca,H.; Pieper,Dietmar H.*; ( Year: 2010). Title: Metabolic networks, microbial ecology and 'omics' technologies: towards understanding in situ biodegradation processes. Journal: Environental Microbiology Volume: 12 Issue: 12, S-Page: 3089- E-Page: 3104 PubMed
  • Authors: Marin,M.; Perez-Pantoja,D.; Donoso,R.; Wray,Victor*; Gonzalez,B.; Pieper,Dietmar H.*; ( Year: 2010). Title: Modified 3-oxoadipate pathway for the biodegradation of methylaromatics in Pseudomonas reinekei MT1. Journal: Journal of Bacteriology Volume: 192 Issue: 6, S-Page: 1543- E-Page: 1552 DOI: 10.1128/JB.01208-09 HZI repository PubMed
  • Authors: Perez-Pantoja,D.; Gonzalez,B.; Pieper,Dietmar H.*; ( Year: 2009). Title: Aerobic degradation of aromatic hydrocarbons. Book Title: Handbook of Hydrocarbon and Lipid Microbiology Editors: Timmis,K.N.; (Ed.). Publisher: Springer, S-Page: 800- E-Page: 829
  • Authors: Pieper,Dietmar H.*; Gonzalez,B.; Camara,B.; Perez-Pantoja,D.; Reineke,W.; ( Year: 2009). Title: Aerobic degradation of chloroaromatics. Book Title: Handbook of Hydrocarbon and Lipid Microbiology Editors: Timmis,K.N.; (Ed.). Publisher: Springer, S-Page: 840- E-Page: 859
  • Authors: Junca,H.; Pieper,Dietmar H.*; ( Year: 2009). Title: Functional marker gene assays for hydrocarbon degrading microbial communities - aerobic. Book Title: Handbook of Hydrocarbon and Lipid Microbiology Editors: Timmis,K.N.; (Ed.). Publisher: Springer, S-Page: 4291- E-Page: 4305
  • Authors: Seeger,M.; Pieper,Dietmar H.*; ( Year: 2009). Title: Genetics of biphenyl biodegradation and co-metabolism of PCBs. Book Title: Handbook of Hydrocarbon and Lipid Microbiology Editors: Timmis,K.N.; (Ed.). Publisher: Springer, S-Page: 1180- E-Page: 1194
  • Authors: Palleroni,N.; Pieper,Dietmar H.*; ( Year: 2009). Title: Microbiology of hydrocarbon-degrading Pseudomonas. Book Title: Handbook of Hydrocarbon and Lipid Microbiology Editors: Timmis,K.N.; (Ed.). Publisher: Springer, S-Page: 1788- E-Page: 1796
  • Authors: Perez-Pantoja,D.; Gonzalez,B.; Pieper,Dietmar H.*; ( Year: 2009). Title: Phylogenomics of aerobic bacterial degradation of aromatics. Book Title: Handbook of Hydrocarbon and Lipid Microbiology Editors: Timmis,K.N.; (Ed.). Publisher: Springer, S-Page: 1356- E-Page: 1391
  • Authors: Vílchez,R.; Pozo,C.; Gómez,M.A.; Rodelas,B.; Gonzáles-López,J.; ( Year: 2007). Title: Dominance of sphingomonads in a copper-exposed biofilm community for groundwater water treatment. Journal: Microbiology Volume: 153 Issue: 2, S-Page: 325- E-Page: 337 DOI: Article WEBURLS


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  • Staphylococcus aureus – der Feind in meiner NaseEin kräftiger Nieser und der Luftdruck katapultiert Millionen von Bakterien aus unserer Nase. Auch wenn wir keinen Schnupfen haben. Ein häufiger Nasenbewohner ist Staphylococcus aureus und wenn der mit dem Luftstoß zufällig auf eine Wunde trifft, haben wir ein Problem… Dietmar Pieper und sein Team wollen wissen, wer noch so alles in unserer Nase lebt – und was wir gegen unerwünschte Bewohner wie Staphylococcus aureus unternehmen können.
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