Computational Biology of Infection Research

The research of the group focuses on the data-driven analysis of biological questions from infection research, as well as method development to solve prediction problems for large biological data sets.


Web applications

Traitar is a web service for phenotyping bacteria based on their genome sequences. 

PhyloPythiaS+ - a self-training method for the rapid reconstruction of low-ranking taxonomic bins from metagenomes

PhyloPythiaS  - the PhyloPythiaS Web Server for Taxonomic Assignment of Metagenome Sequences.

Taxator-tk  performs taxonomic sequence assignment by fast approximate determination of evolutionary neighbors from sequence similarities.

AdaPatch  is a method for detecting positively selected patches of sites on the surface of viral proteins, which are likely candidates for being relevant for adaptive evolution.

Software Downloads

Software implementing the group’s research can be downloaded here.

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