Microbial Interactions and Processes

Microorganisms in the environment are living in complex and interacting communities. Also the surfaces of the human body are inhabited by microorganisms, where the bacterial cell number significantly exceeds that of the human cells. These communities have co-evolved with the human host and are important for human health. They can, however, also be a reservoir for pathogenic microorganisms.

Leader

Selected Publications

Wos-Oxley M, Plumeier I, von Eiff C, Taudien S, Platzer M, Vilchez-Vargas R, Becker K, Pieper DH (2010) A poke into the diversity and associations within human anterior nare microbial communities. ISME J 4:839-851

Vilchez-Vargas R, Geffers R, Suárez-Diez M, Conte I, Waliczek A, Kaser VS, Kralova M, Junca H, Pieper DH (2013) Analysis of the microbial gene landscape and transcriptome for aromatic pollutants and alkane degradation using a novel internally calibrated microarray system. Environ Microbiol 15:1016-1039

Camarinha-Silva A, Jáuregui R, Chaves-Moreno D, Oxley AP, Schaumburg F, Becker K, Wos-Oxley ML, Pieper DH. (2014). Comparing the anterior nare bacterial community of two discrete human populations using Illumina amplicon sequencing. Environ Microbiol. 16:2939-2952

Schulz C, Schütte K, Koch N, Vilchez-Vargas R, Wos-Oxley ML, Oxley AP, Vital M, Malfertheiner P, Pieper DH. (2018). The active bacterial assemblages of the upper GI tract in individuals with and without Helicobacter infection. Gut. 67:216-225

Thänert R, Itzek A, Hoßmann J, Hamisch D, Madsen MB, Hyldegaard O, Skrede S, Bruun T, Norrby-Teglund A; INFECT study group, Medina E, Pieper DH. (2019). Molecular profiling of tissue biopsies reveals unique signatures associated with streptococcal necrotizing soft tissue infections. Nat Commu 10:3846.

Publications

  • Authors: Hassan,H.A.; d'Enza,M.; Armengaud,J.; Pieper,D.H.; ( Year: 2023). Title: Correction to: Biochemical and genetic characterization comparison of four extradiol dioxygenases in Rhizorhabdus wittichii RW1 (Applied Microbiology and Biotechnology, (2022), 106, 17, (5539-5550), 10.1007/s00253-022-12099-3).Journal: Applied Microbiology and Biotechnology DOI: 10.1007/s00253-023-12516-1HZI repositoryPubMed
  • Authors: Octaviana,S.; Primahana,G.; Mozef,T.; Borges,L.G.A.; Pieper,D.H.; Wink,J.; ( Year: 2023). Title: Diversity of Myxobacteria Isolated from Indonesian Mangroves and Their Potential for New Antimicrobial Sources.Journal: Current Microbiology Volume: 80 Issue: 1 DOI: 10.1007/s00284-022-03066-2HZI repositoryPubMed
  • Authors: Oberste,M.; Böse,B.E.; Dos Anjos Borges,L.G.; Junca,H.; Plumeier,I.; Kahl,S.; Simon,F.; Beule,A.G.; Rudack,C.; Pieper,D.H.; ( Year: 2023). Title: Effects of squamous cell carcinoma and smoking status on oropharyngeal and laryngeal microbial communities.Journal: Head Neck DOI: 10.1002/hed.2756HZI repositoryPubMed
  • Authors: Kaune,T.; Griesmann,H.; Theuerkorn,K.; H+ñmmerle,M.; Laumen,H.; Krug,S.; Plumeier,I.; Kahl,S.; Junca,H.; Gustavo dos Anjos Borges,L.; Michl,P.; Pieper,D.H.; Rosendahl,J.; ( Year: 2023). Title: Gender-specific changes of the gut microbiome correlate with tumor development in murine models of pancreatic cancer.Journal: iScience Volume: 26 Issue: 6 DOI: 10.1016/j.isci.2023.106841HZI repositoryWEBURLS
  • Authors: Grobe,B.; Wellhöner,F.; Klein,F.; Chhatwal,P.; Vital,M.; Pieper,D.H.; Voigtländer,T.; Lenzen,H.; Wedemeyer,H.; Solbach,P.; Heidrich,B.; ( Year: 2023). Title: Next Generation Sequencing Outperforms Cultivation-Based Methods for Detection of Bacterial Genera in Bile After Liver Transplantation.Journal: J.Clin.Exp.Hepatol. DOI: 10.1016/j.jceh.2023.08.001WEBURLS
  • Authors: Arce-Rodriguez,A.; Libby,E; Castellón,E; Avendano,R; Cambronero,J.C; Vargas,M; Pieper,D.H; Bertilsson,S; Chavarría,M; Puente-Sánchez,F; ( Year: 2023). Title: Out of the blue: the independent activity of sulfur-oxidizers and diatoms mediate the sudden color shift of a tropical river.Journal: Environmental Microbiomes Volume: 18 Issue: 1 DOI: 10.1186/s40793-023-00464-2HZI repositoryWEBURLS
  • Authors: Helbich,S.; Barrantes,I.; Dos Anjos Borges,L.G.; Pieper,D.H.; Vainshtein,Y.; Sohn,K.; Engesser,K.H.; ( Year: 2023). Title: The 2-methylpropene degradation pathway in Mycobacteriaceae family strains.Journal: Environmental Microbiology DOI: 10.1111/1462-2920.16449HZI repositoryWEBURLS
  • Authors: Dos Anjos Borges,L.G.; Pastuschek,J.; Heimann,Y.; Dawczynski,K.; Bergner,M.; Haase,R.; Stubert,J.; Olbertz,D.; Plumeier,I.; Kahl,S.; Heroven,A.K.; Schleußner,E.; Pieper,D.H.; Zöllkau,J.; PEONS study group; ( Year: 2023). Title: Vaginal and neonatal microbiota in pregnant women with preterm premature rupture of membranes and consecutive early onset neonatal sepsis.Journal: BMC Med. Volume: 21 Issue: 1 DOI: 10.1186/s12916-023-02805-xHZI repositoryPubMed
  • Authors: Hassan,H.A.; Enza,D.; Armengaud,J.; Pieper,D.H.; ( Year: 2022). Title: Biochemical and genetic characterization comparison of four extradiol dioxygenases in Rhizorhabdus wittichii RW1.Journal: Applied Microbiology and Biotechnology Volume: 106 Issue: 17 DOI: 10.1007/s00253-022-12099-3HZI repositoryPubMed
  • Authors: Amils,R.; Escudero,C.; Oggerin,M.; Puente Sánchez,F.; Arce Rodríguez,A.; Fernández Remolar,D.; Rodríguez,N.; García Villadangos,M.; Sanz,J.L.; Briones,C.; S+ínchez,M.; Gómez,F.; Leandro,T.; Moreno-Paz,M.; Prieto-Ballesteros,O.; Molina,A.; Tornos,F.; Sánchez-Andrea,I.; Timmis,K.; Pieper,D.H.; Parro,V.; ( Year: 2022). Title: Coupled C, H, N, S and Fe biogeochemical cycles operating in the continental deep subsurface of the Iberian Pyrite Belt.Journal: Environmental Microbiology DOI: 10.1111/1462-2920.16291HZI repositoryPubMed
  • Authors: Vieira Lima,C.P.; Grisi,D.C.; Guimaräes,M.D.C.M.; Salles,L.P.; Kruly,P.C.; Do,T.; Dos Anjos Borges,L.G.; Dame-Teixeira,N.; ( Year: 2022). Title: Enrichment of sulphate-reducers and depletion of butyrate-producers may be hyperglycaemia signatures in the diabetic oral microbiome.Journal: J.Oral Microbiol. Volume: 14 Issue: 1, S-Page: 2082727 DOI: 10.1080/20002297.2022.2082727HZI repositoryPubMed
  • Authors: Junca,H.; Pieper,D.H.; ( Year: 2022). Title: Hundreds of Novel DNA Viruses From a Single Healthy Patient: Biomarker Potential for Colorectal Cancer.Journal: Gastroenterology Volume: 163 Issue: 3 DOI: 10.1053/j.gastro.2022.06.075HZI repositoryPubMed
  • Authors: Hankel,J.; Mößeler,A.; Hartung,C.B.; Rath,S.; Schulten,L.; Visscher,C.; Kamphues,J.; Vital,M.; ( Year: 2022). Title: Responses of Ileal and Fecal Microbiota to Withdrawal of Pancreatic Enzyme Replacement Therapy in a Porcine Model of Exocrine Pancreatic Insufficiency.Journal: International Journal of Molecular Sciences Volume: 23 Issue: 19 DOI: 10.3390/ijms231911700HZI repositoryPubMed
  • Authors: Klein,F.; Wellhöner,F.; Plumeier,I.; Kahl,S.; Chhatwal,P.; Vital,M.; Voigtländer,T.; Pieper,D.H.; Manns,M.P.; Lenzen,H.; Solbach,P.; Heidrich,B.; ( Year: 2022). Title: The biliary microbiome in ischaemic-type biliary lesions can be shaped by stenting but is resilient to antibiotic treatment.Journal: Liver International DOI: 10.1111/liv.15194HZI repositoryPubMed
  • Authors: Junca,H.; Pieper,D.H.; Medina,E.; ( Year: 2022). Title: The emerging potential of microbiome transplantation on human health interventions.Journal: Comput.Struct.Biotechnol.J. Volume: 20 Issue: January 2022, S-Page: 615- E-Page: 627 DOI: 10.1016/j.csbj.2022.01.009HZI repositoryPubMed
  • Authors: Stallmach,A.; Grunert,P.; Stallhofer,J.; Löffler,B.; Baier,M.; Rödel,J.; Kiehntopf,M.; Neugebauer,S.; Pieper,D.H.; Junca,H.; Tannapfel,A.; Merkel,U.; Schumacher,U.; Breternitz-Gruhne,M.; Heller,T.; Schauer,A.; Hartmann,M.; Steube,A.; ( Year: 2022). Title: Transfer of FRozen Encapsulated multi-donor Stool filtrate for active ulcerative Colitis (FRESCO): study protocol for a prospective, multicenter, double-blind, randomized, controlled trial.Journal: Trials Volume: 23 Issue: 1, S-Page: 173 DOI: 10.1186/s13063-022-06095-1HZI repositoryPubMed
  • Authors: Rox,K.; Rath,S.; Pieper,D.H.; Vital,M.; Brönstrup,M.; ( Year: 2021). Title: A simplified LC-MS/MS method for the quantification of the cardiovascular disease biomarker trimethylamine-N-oxide and its precursors.Journal: J.Pharmaceut.Analy. DOI: 10.1016/j.jpha.2021.03.007HZI repositoryWEBURLS
  • Authors: Graf,A.C.; Striesow,J.; Pane-Farre,J.; Sura,T.; Wurster,M.; Lalk,M.; Pieper,D.H.; Becher,D.; Kahl,B.C.; Riedel,K.; ( Year: 2021). Title: An Innovative Protocol for Metaproteomic Analyses of Microbial Pathogens in Cystic Fibrosis Sputum.Journal: Front Cell Infect.Microbiol. Volume: 11, S-Page: 724569 DOI: 10.3389/fcimb.2021.724569HZI repositoryPubMed
  • Authors: Hübner,I.; Shapiro,J.A.; Hoßmann,J.; Drechsel,J.; Hacker,S.M.; Rather,P.N.; Pieper,D.H.; Wuest,W.M.; Sieber,S.A.; ( Year: 2021). Title: Broad spectrum antibiotic xanthocillin X effectively kills Acinetobacter baumannii via dysregulation of heme biosynthesis.Journal: ACS Cent.Sci. DOI: 10.1021/acscentsci.0c01621HZI repositoryWEBURLS
  • Authors: Wellhöner,F.; Döscher,N.; Woelfl,F.; Vital,M.; Plumeier,I.; Kahl,S.; Potthoff,A.; Manns,M.P.; Pieper,D.H.; Cornberg,M.; Wedemeyer,H.; Heidrich,B.; ( Year: 2021). Title: Eradication of chronic HCV infection: improvement of dysbiosis only in patients without liver cirrhosis.Journal: Hepatology Volume: 74 Issue: 1, S-Page: 72- E-Page: 82 DOI: 10.1002/hep.31700HZI repositoryPubMed
  • Authors: Kopfnagel,V.; Dreyer,S.; Zeitvogel,J.; Pieper,D.H.; Buch,A.; Sodeik,B.; Rademacher,F.; Harder,J.; Werfel,T.; ( Year: 2021). Title: Free human DNA attenuates the activity of antimicrobial peptides in atopic dermatitis.Journal: Allergy DOI: 10.1111/all.14992HZI repositoryPubMed
  • Authors: Rath,S.; Rox,K.; Kleine,Bardenhorst S.; Schminke,U.; Dörr,M.; Mayerle,J.; Frost,F.; Lerch,M.M.; Karch,A.; Brönstrup,M.; Pieper,D.H.; Vital,M.; ( Year: 2021). Title: Higher Trimethylamine-N-Oxide Plasma Levels with Increasing Age Are Mediated by Diet and Trimethylamine-Forming Bacteria.Journal: mSystems., S-Page: e0094521 DOI: 10.1128/mSystems.00945-21HZI repositoryPubMed
  • Authors: Schütte,K.; Schulz,C.; Vilchez-Vargas,R.; Vasapolli,R.; Palm,F.; Simon,B.; Schomburg,D.; Lux,A.; Geffers,R.; Pieper,D.H.; Link,A.; Malfertheiner,P.; ( Year: 2021). Title: Impact of healthy aging on active bacterial assemblages throughout the gastrointestinal tract.Journal: Gut Microbes Volume: 13 Issue: 1, S-Page: Article no. 1966261 DOI: 10.1080/19490976.2021.1966261HZI repositoryPubMed
  • Authors: Lettieri,G.M.; Santiago,L.M.; Lettieri,G.C.; Borges,L.G.D.A.; Marconatto,L.; de Oliveira,L.A.; Dame-Teixeira,N.; Salles,L.P.; ( Year: 2021). Title: Oral Phenotype and Salivary Microbiome of Individuals With Papillon-Lefèvre Syndrome.Journal: Front Cell Infect.Microbiol. Volume: 11, S-Page: Art. no. 720790 DOI: 10.3389/fcimb.2021.720790HZI repositoryPubMed
  • Authors: Bruun,T.; Rath,E.; Bruun Madsen,M.; Oppegaard,O.; Nekludov,M.; Arnell,P.; Karlsson,Y.; Babbar,A.; Bergey,F.; Itzek,A.; Hyldegaard,O.; Norrby-Teglund,A.; Skrede,S.; INFECT Study Group; ( Year: 2021). Title: Risk factors and Predictors of Mortality in Streptococcal Necrotizing Soft-Tissue Infections: A Multicenter Prospective Study.Journal: Clin.Infect.Dis. Volume: 72 Issue: 2, S-Page: 293- E-Page: 300 DOI: 10.1093/cid/ciaa027HZI repositoryPubMed
  • Authors: Rojas-Gätjens,D.; Arce-Rodríguez,A.; Puente-Sánchez,F.; Avendano,R.; Libby,E.; Mora-Amador,R.; Rojas-Jimenez,K.; Fuentes-Schweizer,P.; Pieper,D.H.; Chavarría,M; ( Year: 2021). Title: Temperature and elemental sulfur shape microbial communities in two extremely acidic aquatic volcanic environments.Journal: Extremophiles. Volume: 25 Issue: 1, S-Page: 85- E-Page: 99 DOI: 10.1007/s00792-020-01213-wHZI repositoryPubMed
  • Authors: García-Bonilla,E.; Chaves-Moreno,D.; Riano-Pachón,D.; Terán,W.; Acosta,A.; Junca,H.; ( Year: 2021). Title: The Hologenome of Haliclona fulva (Porifera, Demospongiae) Reveals an Abundant and Diverse Viral Community.Journal: Front.Mar.Sci. Volume: 8, S-Page: Article number 736817 DOI: 10.3389/fmars.2021.736817HZI repositoryWEBURLS
  • Authors: Annabi,N.; Baker,M.; Boettiger,A.; Chakraborty,D.; Chen,Y.; Corbett,K.S.; Correia,B.; Dahlman,J.; De Oliveira,T.; Ertuerk,A.; Yanik,M.F.; Henaff,E.; Huch,M.; Iliev,I.D.; Jacobs,T.; Junca,H.; Keung,A.; Kolodkin-Gal,I.; Krishnaswamy,S.; Lancaster,M.; Macosko,E.; Martinez-Nunez,M.A.; Miura,K.; Molloy,J.; Cruz,A.O.; Platt,R.J.; Posey,A.D.,Jr.; Shao,H.; Simunovic,M.; Slavov,N.; Takebe,T.; Vandenberghe,L.H.; Varshney,R.K.; Wang,J.; ( Year: 2021). Title: Voices of biotech research.Journal: Nat.Biotechnol. Volume: 39 Issue: 3, S-Page: 281- E-Page: 286 DOI: 10.1038/s41587-021-00847-1PubMed
  • Authors: Smoczek,M.; Vital,M.; Wedekind,D.; Basic,M.; Zschemisch,N.H.; Pieper,D.H.; Siebert,A.; Bleich,A.; Buettner,M.; ( Year: 2020). Title: A combination of genetics and microbiota influences the severity of the obesity phenotype in diet-induced obesity.Journal: Sci.Rep. Volume: 10 Issue: 1, S-Page: 6118 DOI: 10.1038/s41598-020-63340-wHZI repositoryPubMed
  • Authors: Bergsten,H.; Madsen,M.B.; Bergey,F.; Hyldegaard,O.; Skrede,S.; Arnell,P.; Oppegaard,O.; Itzek,A.; Perner,A.; Svensson,M.; Norrby-Teglund,A.; INFECT study group.; ( Year: 2020). Title: Correlation between immunoglobulin dose administered and plasma neutralization of streptococcal superantigens in patients with necrotizing soft tissue infections.Journal: Clin.Infect.Dis. Volume: 71 Issue: 7, S-Page: 1772-- E-Page: 1775 DOI: 10.1093/cid/ciaa022HZI repositoryPubMed
  • Authors: Duysburgh,C.; Ossieur,W.P.; Paepe,K.; Van den Abbeele,P.; Vichez-Vargas,R.; Vital,M.; Pieper,D.H.; Van De Wiele,T.; Hesta,M.; Possemiers,S.; ( Year: 2020). Title: Development and validation of the Simulator of the Canine Intestinal Microbial Ecosystem (SCIMETM).Journal: J.Anim Sci. Volume: 98 Issue: 1, S-Page: skz357 DOI: 10.1093/jas/skz357HZI repositoryPubMed
  • Authors: Nitz,H.; Duarte,M.; Jauregui,R.; Pieper,D.H.; Müller,J.A.; Kästner,M.; ( Year: 2020). Title: Identification of benzene-degrading Proteobacteria in a constructed wetland by employing in situ microcosms and RNA-stable isotope probing.Journal: Applied Microbiology and Biotechnology Volume: 104 Issue: 4, S-Page: 1809- E-Page: 1820 DOI: 10.1007/s00253-019-10323-1HZI repositoryPubMed
  • Authors: Treffon,J.; Chaves-Moreno,D.; Niemann,S.; Pieper,D.H.; Vogl,T.; Roth,J.; Kahl,B.C.; ( Year: 2020). Title: Importance of superoxide dismutase A and M for protection of Staphylococcus aureus in the oxidative stressful environment of cystic fibrosis airways.Journal: Cell Microbiol. Volume: 22 Issue: 5, S-Page: e13158 DOI: 10.1111/cmi.13158HZI repositoryPubMed
  • Authors: Zöllkau,J.; Pieper,D.H.; Pastuschek,J.; Makarewicz,O.; Mentzel,H.J.; Dawczynski,K.; Schleußner,E.; ( Year: 2020). Title: Lethal Neonatal Respiratory Failure by Perinatal Transmission of Ureaplasma Parvum after Maternal PPROM.Journal: Z.Geburtshilfe Neonatol. DOI: 10.1055/a-1326-2719HZI repositoryPubMed
  • Authors: Arce-Rodriguez,A.; Puente-Sánchez,F.; Avendano,R.; Libby,E.; Mora-Amador,R.; Rojas-Jimenez,K.; Martinez,M.; Pieper,D.H.; Chavarria,M.; ( Year: 2020). Title: Microbial Community Structure Along a Horizontal Oxygen Gradient in a Costa Rican Volcanic Influenced Acid Rock Drainage System.Journal: Microb.Ecol. Volume: 80 Issue: 4, S-Page: 793- E-Page: 808 DOI: 10.1007/s00248-020-01530-9HZI repositoryPubMed
  • Authors: Rath,S.; Rud,T.; Pieper,D.H.; Vital,M.; ( Year: 2020). Title: Potential TMA-Producing Bacteria Are Ubiquitously Found in Mammalia.Journal: Front.Microbiol. Volume: 10, S-Page: Article number 2966 DOI: 10.3389/fmicb.2019.02966HZI repositoryPubMed
  • Authors: Siemens,N.; Oehmcke-Hecht,S.; Hossmann,J.; Skorka,S.B.; Nijhuis,R.H.T.; Ruppen,C.; Skrede,S.; Rohde,M.; Schultz,D.; Lalk,M.; Itzek,A.; Pieper,D.H.; van den Bout,C.J.; Claas,E.C.J.; Kuijper,E.J.; Mauritz,R.; Sendi,P.; Wunderink,H.F.; Norrby-Teglund,A.; ( Year: 2020). Title: Prothrombotic and Proinflammatory Activities of the.Journal: J.Innate.Immun. Volume: 12 Issue: 4, S-Page: 291-- E-Page: 303 DOI: 10.1159/000504002HZI repositoryPubMed
  • Authors: Le,P.; Kunold,E.; Macsics,R.; Rox,K.; Jennings,M.C.; Ugur,I.; Reinecke,M.; Chaves-Moreno,D.; Hackl,M.W.; Fetzer,C.; Mandl,F.A.M.; Lehmann,J.; Korotkov,V.S.; Hacker,S.M.; Kuster,B.; Antes,I.; Pieper,D.H.; Rohde,M.; Wuest,W.M.; Medina,E.; Sieber,S.A.; ( Year: 2020). Title: Repurposing human kinase inhibitors to create an antibiotic active against drug-resistant Staphylococcus aureus, persisters and biofilms.Journal: Nat.Chem. Volume: 12 Issue: 2, S-Page: 145- E-Page: 158 DOI: 10.1038/s41557-019-0378-7HZI repositoryPubMed
  • Authors: Espinosa,M.J.C.; Blanco,A.C.; Schmidgall,T.; Atanasoff-Kardjalieff,A.K.; Kappelmeyer,U.; Tischler,D.; Pieper,D.H.; Heipieper,H.J.; Eberlein,C.; ( Year: 2020). Title: Toward Biorecycling: Isolation of a Soil Bacterium That Grows on a Polyurethane Oligomer and Monomer.Journal: Front Microbiol. Volume: 11, S-Page: 404 DOI: 10.3389/fmicb.2020.00404HZI repositoryPubMed
  • Authors: Bruesch,I.; Meier,P.; Vital,M.; Pieper,D.H.; Selke,K.; Böhlen,S.; Basic,M.; Meier,M.; Glage,S.; Hundrieser,J.; Wedekind,D.; Buettner,M.; Bleich,A.; ( Year: 2019). Title: Analysis of Cdcs1 colitogenic effects in the hematopoietic compartment reveals distinct microbiome interaction and a new subcongenic interval active in T cells.Journal: Mucosal Immunol. Volume: 12 Issue: 3, S-Page: 691- E-Page: 702 DOI: 10.1038/s41385-019-0133-9PubMed
  • Authors: Vasapolli,R.; Schutte,K.; Schulz,C.; Vital,M.; Schomburg,D.; Pieper,D.H.; Vilchez-Vargas,R.; Malfertheiner,P.; ( Year: 2019). Title: Analysis of Transcriptionally Active Bacteria Throughout the Gastrointestinal Tract of Healthy Individuals.Journal: Gastroenterology Volume: 157 Issue: 4, S-Page: 1081- E-Page: 1092 DOI: 10.1053/j.gastro.2019.05.068PubMed
  • Authors: Caputo,M.; Zoch-Lesniak,B.; Karch,A.; Vital,M.; Meyer,F.; Klawonn,F.; Baillot,A.; Pieper,D.H.; Mikolajczyk,R.T.; ( Year: 2019). Title: Bacterial community structure and effects of picornavirus infection on the anterior nares microbiome in early childhood.Journal: BMC.Microbiol. Volume: 19 Issue: 1, S-Page: 1 DOI: 10.1186/s12866-018-1372-8HZI repositoryPubMed
  • Authors: Menni,C.; Hernandez,M.M.; Vital,M.; Mohney,R.P.; Spector,T.D.; Valdes,A.M.; ( Year: 2019). Title: Circulating levels of the anti-oxidant indoleproprionic acid are associated with higher gut microbiome diversity.Journal: Gut Microbes Volume: 10 Issue: 6, S-Page: 688- E-Page: 695 DOI: 10.1080/19490976.2019.1586038HZI repositoryPubMed
  • Authors: Gottschick,C.; Raupach-Rosin,H.; Langer,S.; Hassan,L.; Horn,J.; Dorendorf,E.; Caputo,M.; Bittner,M.; Beier,L.; Rübsamen,N.; Schlinkmann,K.; Zoch,B.; Guzmán,C.A.; Hansen,G.; Heselich,V.; Holzapfel,E.; Hübner,J.; Pietschmann,T.; Pieper,D.H.; Pletz,M.; Riese,P.; Schmidt-Pokrzywniak,A.; Hartwig,S.; von,Kaisenberg C.; Aydogdu,M.; Buhles,M.; Dressler,F.; Eberl,W.; Haase,R.; Edler von,Koch F.; Feidicker,S.; Frambach,T.; Franz,H.G.B.; Guthmann,F.; Koch,H.G.; Seeger,S.; Oberhoff,C.; Pauker,W.; Petry,K.U.; Schild,R.L.; Tchirikov,M.; Röhrig,E.; Mikolajczyk,R.; ( Year: 2019). Title: Cohort profile: The LoewenKIDS Study - life-course perspective on infections, the microbiome and the development of the immune system in early childhood.Journal: Int.J.Epidemiol. Volume: 48 Issue: 4, S-Page: 1042- E-Page: 1043H DOI: 10.1093/ije/dyz001HZI repositoryPubMed
  • Authors: Conrads,G.; Wendt,L.K.; Hetrodt,F.; Deng,Z.L.; Pieper,D.; Abdelbary,M.M.H.; Barg,A.; Wagner-Döbler,I.; Apel,C.; ( Year: 2019). Title: Deep sequencing of biofilm microbiomes on dental composite materials.Journal: J.Oral Microbiol. Volume: 11 Issue: 1 DOI: 10.1080/20002297.2019.1617013HZI repositoryPubMed
  • Authors: Vital,M.; Rud,T.; Rath,S.; Pieper,D.H.; Schlüter,D.; ( Year: 2019). Title: Diversity of Bacteria Exhibiting Bile Acid-inducible 7alpha-dehydroxylation Genes in the Human Gut.Journal: Comput.Struct.Biotechnol.J. Volume: 17, S-Page: 1016- E-Page: 1019 DOI: 10.1016/j.csbj.2019.07.012HZI repositoryPubMed
  • Authors: Gottschick,C.; Raupach-Rosin,H.; Langer,S.; Hassan,L.; Horn,J.; Dorendorf,E.; Caputo,M.; Bittner,M.; Beier,L.; R³bsamen,N.; Schlinkmann,K.; Zoch,B.; Guzmán,C.A.; Hansen,G.; Heselich,V.; Holzapfel,E.; Hübner,J.; Pietschmann,T.; Pieper,D.H.; Pletz,M.; Riese,P.; Schmidt-Pokrzywniak,A.; Hartwig,S.; Von Kaisenberg,C.; Aydogdu,M.; Buhles,M.; Dressler,F.; Eberl,W.; Haase,R.; von Koch,F.E.; Feidicker,S.; Frambach,T.; Franz,H.G.B.; Guthmann,F.; Koch,H.G.; Seeger,S.; Oberhoff,C.; Pauker,W.; Petry,K.U.; Schild,R.L.; Tchirikov,M.; R÷hrig,E.; Karch,A.; Mikolajczyk,R.; ( Year: 2019). Title: Erratum: Cohort profile: The LoewenKIDS Study - Life-course perspective on infections, the microbiome and the development of the immune system in early childhood (International Journal of Epidemiology (2019) DOI: 10.1093/ije/dyz001).Journal: Int.J.Epidemiol. Volume: 48 Issue: 4, S-Page: 1382 (Article number dyz069)- E-Page: 1383 DOI: 10.1093/ije/dyz069PubMed
  • Authors: Strunecky,O.; Kopejtka,K.; Goecke,F.; Tomasch,J.; Lukavsky,J.; Neori,A.; Kahl,S.; Pieper,D.H.; Pilarski,P.; Kaftan,D.; Koblizek,M.; ( Year: 2019). Title: High diversity of thermophilic cyanobacteria in Rupite hot spring identified by microscopy, cultivation, single-cell PCR and amplicon sequencing.Journal: Extremophiles. Volume: 23, S-Page: 35- E-Page: 48 DOI: 10.1007/s00792-018-1058-zPubMed
  • Authors: Herzog,S.; Dach,F.; de Buhr,N.; Niemann,S.; Schlagowski,J.; Chaves-Moreno,D.; Neumann,C.; Goretzko,J.; Schwierzeck,V.; Mellmann,A.; Dübbers,A.; Küster,P.; Schültingkemper,H.; Rescher,U.; Pieper,D.H.; Von Köckritz-Blickwede,M.; Kahl,B.C.; ( Year: 2019). Title: High Nuclease Activity of Long Persisting Staphylococcus aureus Isolates Within the Airways of Cystic Fibrosis Patients Protects Against NET-Mediated Killing.Journal: Front Immunol. Volume: 10, S-Page: 2552 DOI: 10.3389/fimmu.2019.02552HZI repositoryPubMed
  • Authors: Steube,A.; Vital,M.; Grunert,P.; Pieper,D.H.; Stallmach,A.; ( Year: 2019). Title: Long-term Multidonor Fecal Microbiota Transfer (FMT) by Oral Capsules for Active Ulcerative Colitis.Journal: J.Crohns.Colitis. Volume: 13 Issue: 11, S-Page: 1480jjz073- E-Page: 1481 DOI: 10.1093/ecco-jcc/jjz073HZI repositoryPubMed
  • Authors: Emgard,J.; Bergsten,H.; McCormick,J.K.; Barrantes,I.; Skrede,S.; Sandberg,J.K.; Norrby-Teglund,A.; ( Year: 2019). Title: MAIT Cells Are Major Contributors to the Cytokine Response in Group A Streptococcal Toxic Shock Syndrome.Journal: Proc.Natl.Acad.Sci.U.S.A Volume: 116 Issue: 51, S-Page: 25923- E-Page: 25931 DOI: 10.1073/pnas.1910883116HZI repositoryPubMed
  • Authors: Pineda-Quiroga,C.; Borda-Molina,D.; Chaves-Moreno,D.; Ruiz,R.; Atxaerandio,R.; Camarinha-Silva,A.; Garcia-Rodriguez,A.; ( Year: 2019). Title: Microbial and Functional Profile of the Ceca from Laying Hens Affected by Feeding Prebiotics, Probiotics, and Synbiotics.Journal: Microorganisms. Volume: 7 Issue: 5, S-Page: 123 DOI: 10.3390/microorganisms7050123HZI repositoryPubMed
  • Authors: Thänert,R.; Itzek,A.; Hossmann,J.; Hamisch,D.; Madsen,M.B.; Hyldegaard,O.; Skrede,S.; Bruun,T.; Norrby-Teglund,A.; Medina,E.; Pieper,D.H.; ( Year: 2019). Title: Molecular profiling of tissue biopsies reveals unique signatures associated with streptococcal necrotizing soft tissue infections.Journal: Nature Communications Volume: 10 Issue: 1, S-Page: 3846 DOI: 10.1038/s41467-019-11722-8HZI repositoryPubMed
  • Authors: Baude,J.; Bastien,S.; Gillet,Y.; Leblanc,P.; Itzek,A.; Tristan,A.; Bes,M.; Duguez,S.; Moreau,K.; Diep,B.A.; Norrby-Teglund,A.; Henry,T.; Vandenesch,F.; ( Year: 2019). Title: Necrotizing Soft Tissue Infections S.aureus - but not S.pyogenes- isolates display high rate of internalization and cytotoxicity toward human myoblasts.Journal: J.Infect Dis. Volume: 220 Issue: 4, S-Page: 710- E-Page: 719 DOI: 10.1093/infdis/jiz167HZI repositoryPubMed
  • Authors: Schipke,J.; Vital,M.; Schnapper-Isl,A.; Pieper,D.H.; Mühlfeld,C.; ( Year: 2019). Title: Spermidine and Voluntary Activity Exert Differential Effects on Sucrose- Compared with Fat-Induced Systemic Changes in Male Mice.Journal: J.Nutr. Volume: 149 Issue: 3, S-Page: 451- E-Page: 462 DOI: 10.1093/jn/nxy272PubMed
  • Authors: Babbar,A.; Barrantes,I.; Pieper,D.H.; Itzek,A.; ( Year: 2019). Title: Superantigen SpeA attenuates the biofilm forming capacity of Streptococcus pyogenes.Journal: J.Microbiol. Volume: 57, S-Page: 1- E-Page: 11 DOI: 10.1007/s12275-019-8648-zPubMed
  • Authors: Wellhöner,F.; Döscher,N.; Tergast,T.L.; Vital,M.; Plumeier,I.; Kahl,S.; Potthoff,A.; Manns,M.P.; Maasoumy,B.; Wedemeyer,H.; Cornberg,M.; Pieper,D.H.; Heidrich,B.; ( Year: 2019). Title: The impact of proton pump inhibitors on the intestinal microbiota in chronic hepatitis C patients.Journal: Scand.J.Gastroenterol. Volume: 54 Issue: 8, S-Page: 1033- E-Page: 1041 DOI: 10.1080/00365521.2019.1647280PubMed
  • Authors: Arce-Rodríguez,A.; Puente-Sánchez,F.; Avendaño,R.; Martínez-Cruz,M.; Moor,J.M.; Pieper,D.H.; Chavarría,M.; ( Year: 2019). Title: Thermoplasmatales and sulfur-oxidizing bacteria dominate the microbial community at the surface water of a CO2-rich hydrothermal spring located in Tenorio Volcano National Park, Costa Rica.Journal: Extremophiles Volume: 23 Issue: 2, S-Page: 177- E-Page: 187 DOI: 10.1007/s00792-018-01072-6HZI repositoryPubMed
  • Authors: Villegas-Plazas,M.; Wos-Oxley,M.L.; Sanchez,J.A.; Pieper,D.H.; Thomas,O.P.; Junca,H.; ( Year: 2019). Title: Variations in Microbial Diversity and Metabolite Profiles of the Tropical Marine Sponge Xestospongia muta with Season and Depth.Journal: Microb.Ecol. Volume: 78 Issue: 1, S-Page: 243- E-Page: 256 DOI: 10.1007/s00248-018-1285-yHZI repositoryPubMed
  • Authors: Stallmach,A.; Grunert,P.; Pieper,D.; Steube,A.; ( Year: 2019). Title: [Ulcerative colitis: Does the modulation of gut microbiota induce long-lasting remission?] Colitis ulcerosa: Kann eine Modulation der intestinalen Mikrobiota eine langfristige Remission bedingen?.Journal: Z.Gastroenterol. Volume: 57 Issue: 7, S-Page: 834- E-Page: 842 DOI: 10.1055/a-0874-6603PubMed
  • Authors: Chalermwatanachai,T.; Vilchez-Vargas,R.; Holtappels,G.; Lacoere,T.; Jáuregui,R.; Kerckhof,F.M.; Pieper,D.H.; Van De Wiele,T.; Vaneechoutte,M.; Van Zele,T.; Bachert,C.; ( Year: 2018). Title: Chronic rhinosinusitis with nasal polyps is characterized by dysbacteriosis of the nasal microbiota.Journal: Sci.Rep. Volume: 8 Issue: 1, S-Page: Article number 7926 DOI: 10.1038/s41598-018-26327-2HZI repositoryPubMed
  • Authors: Vásquez-Pineros,M.A.; Martínez-Lavanchy,P.M.; Jehmlich,N.; Pieper,D.H.; Rincón,C.A.; Harms,H.; Junca,H.; Heipieper,H.J.; ( Year: 2018). Title: Delftia sp. LCW, a strain isolated from a constructed wetland shows novel properties for dimethylphenol isomers degradation.Journal: BMC Microbiology Volume: 18 Issue: 1, S-Page: Article number 108 DOI: 10.1186/s12866-018-1255-zHZI repositoryPubMed
  • Authors: Babbar,A.; Itzek,A.; Pieper,D.H.; Nitsche-Schmitz,D.P.; ( Year: 2018). Title: Detection of Streptococcus pyogenes virulence genes in Streptococcus dysgalactiae subsp. equisimilis from Vellore, India.Journal: Folia Microbiol.(Praha) Volume: 63 Issue: 5, S-Page: 581- E-Page: 586 DOI: 10.1007/s12223-018-0595-2HZI repositoryPubMed
  • Authors: Piwosz,K.; Shabarova,T.; Tomasch,J.; Simek,K.; Kopejtka,K.; Kahl,S.; Pieper,D.H.; Koblizek,M.; ( Year: 2018). Title: Determining lineage-specific bacterial growth curves with a novel approach based on amplicon reads normalization using internal standard (ARNIS).Journal: ISME Journal Volume: 12 Issue: 11, S-Page: 2640- E-Page: 2654 DOI: 10.1038/s41396-018-0213-yHZI repositoryPubMed
  • Authors: Korsch,M.; Marten,S.M.; Walther,W.; Vital,M.; Pieper,D.H.; Dötsch,A.; ( Year: 2018). Title: Impact of dental cement on the peri-implant biofilm-microbial comparison of two different cements in an in vivo observational study.Journal: Clin.Implant Dent.Relat.Res. Volume: 20 Issue: 5, S-Page: 806- E-Page: 813 DOI: 10.1111/cid.12650HZI repositoryPubMed
  • Authors: Ehsani,E.; Hernandez-Sanabria,E.; Kerckhof,F.M.; Props,R.; Vilchez-Vargas,R.; Vital,M.; Pieper,D.H.; Boon,N.; ( Year: 2018). Title: Initial evenness determines diversity and cell density dynamics in synthetic microbial ecosystems.Journal: Sci.Rep. Volume: 8 Issue: 1, S-Page: Article number 340 DOI: 10.1038/s41598-017-18668-1HZI repositoryPubMed
  • Authors: Vital,M.; Howe,A.; Bergeron,N.; Krauss,R.M.; Jansson,J.K.; Tiedje,J.M.; ( Year: 2018). Title: Metagenomic insights into resistant starch degradation by human gut microbiota.Journal: Appl.Environ.Microbiol. Volume: 84 Issue: 23, S-Page: AEM.01562-18 DOI: 10.1128/AEM.01562-18HZI repositoryPubMed
  • Authors: Lopez-Fernandez,M.; Vilchez-Vargas,R.; Jroundi,F.; Boon,N.; Pieper,D.; Merroun,M.L.; ( Year: 2018). Title: Microbial community changes induced by uranyl nitrate in bentonite clay microcosms.Journal: Appl.Clay Sci. Volume: 160, S-Page: 206- E-Page: 216 DOI: 10.1016/j.clay.2017.12.034HZI repositoryWEBURLS
  • Authors: Pezoldt,J.; Pasztoi,M.; Zou,M.; Wiechers,C.; Beckstette,M.; Thierry,G.R.; Vafadarnejad,E.; Floess,S.; Arampatzi,P.; Buettner,M.; Schweer,J.; Fleissner,D.; Vital,M.; Pieper,D.H.; Basic,M.; Dersch,P.; Strowig,T.; Hornef,M.; Bleich,A.; Bode,U.; Pabst,O.; Bajenoff,M.; Saliba,A.E.; Hühn,J.; ( Year: 2018). Title: Neonatally imprinted stromal cell subsets induce tolerogenic dendritic cells in mesenteric lymph nodes.Journal: Nature Communications Volume: 9 Issue: 1, S-Page: 3903 DOI: 10.1038/s41467-018-06423-7HZI repositoryPubMed
  • Authors: Rath,S.; Rud,T.; Karch,A.; Pieper,D.H.; Vital,M.; ( Year: 2018). Title: Pathogenic functions of host microbiota.Journal: Microbiome Volume: 6 Issue: 1, S-Page: Article number 174 DOI: 10.1186/s40168-018-0542-0HZI repositoryPubMed
  • Authors: Babbar,A.; Bruun,T.; Hyldegaard,O.; Nekludov,M.; Arnell,P.; Pieper,D.H.; Itzek,A.; ( Year: 2018). Title: Pivotal Role of Preexisting Pathogen-Specific Antibodies in the Development of Necrotizing Soft-Tissue Infections.Journal: The Journal of infectious diseases Volume: 218 Issue: 1, S-Page: 44- E-Page: 52 DOI: 10.1093/infdis/jiy110PubMed
  • Authors: Salden,B.N.; Troost,F.J.; Wilms,E.; Truchado,P.; Vilchez-Vargas,R.; Pieper,D.H.; Jáuregui,R.; Marzorati,M.; Van De Wiele,T.; Possemiers,S.; Masclee,A.A.; ( Year: 2018). Title: Reinforcement of intestinal epithelial barrier by arabinoxylans in overweight and obese subjects: A randomized controlled trial: Arabinoxylans in gut barrier.Journal: Clin.Nutr. Volume: 37 Issue: 2, S-Page: 471- E-Page: 480 DOI: 10.1016/j.clnu.2017.01.024PubMed
  • Authors: Brandenberger,C.; Kling,K.M.; Vital,M.; Christian,M.; ( Year: 2018). Title: The Role of Pulmonary and Systemic Immunosenescence in Acute Lung Injury.Journal: Aging Dis. Volume: 9 Issue: 4, S-Page: 553- E-Page: 565 DOI: 10.14336/AD.2017.0902HZI repositoryPubMed
  • Authors: Puente-Sánchez,F.; Arce-Rodríguez,A.; Oggerin,M.; Garcia-Villadangos,M.; Moreno-Paz,M.; Blanco,Y.; Rodriguez,N.; Bird,L.; Lincoln,S.A.; Tornos,F.; Prieto-Ballesteros,O.; Freeman,K.H.; Pieper,D.H.; Timmis,K.N.; Amils,R.; Parro,V.; ( Year: 2018). Title: Viable cyanobacteria in the deep continental subsurface.Journal: Proc.Natl.Acad.Sci.U.S.A Volume: 115 Issue: 42, S-Page: 10702- E-Page: 10707 DOI: 10.1073/pnas.1808176115HZI repositoryPubMed
  • Authors: Vital,M.; Karch,A.; Pieper,D.H.; ( Year: 2017). Title: Colonic Butyrate-Producing Communities in Humans: an Overview Using Omics Data.Journal: mSystems. Volume: 2 Issue: 6, S-Page: e00130-17 DOI: 10.1128/mSystems.00130-17HZI repositoryPubMed
  • Authors: Akmatov,M.K.; Koch,N.; Vital,M.; Ahrens,W.; Flesch-Janys,D.; Fricke,J.; Gatzemeier,A.; Greiser,H.; Gunther,K.; Illig,T.; Kaaks,R.; Krone,B.; Kuhn,A.; Linseisen,J.; Meisinger,C.; Michels,K.; Moebus,S.; Nieters,A.; Obi,N.; Schultze,A.; Six-Merker,J.; Pieper,D.H.; Pessler,F.; ( Year: 2017). Title: Determination of nasal and oropharyngeal microbiomes in a multicenter population-based study - findings from Pretest 1 of the German National Cohort.Journal: Sci.Rep. Volume: 7 Issue: 1, S-Page: 1855 DOI: 10.1038/s41598-017-01212-6HZI repositoryPubMed
  • Authors: Milici,M.; Vital,M.; Tomasch,J.; Badewien,T.H.; Giebel,H.A.; Plumeier,I.; Wang,H.; Pieper,D.H.; Wagner-Döbler,I.; Simon,M.; ( Year: 2017). Title: Diversity and community composition of particle-associated and free-living bacteria in mesopelagic and bathypelagic Southern Ocean water masses: Evidence of dispersal limitation in the Bransfield Strait.Journal: Limnol.Oceanogr. Volume: 62 Issue: 3, S-Page: 1080- E-Page: 1095 DOI: 10.1002/lno.10487HZI repositoryWEBURLS
  • Authors: Babbar,A.; Nitsche-Schmitz,D.P.; Pieper,D.H.; Barrantes,I.; ( Year: 2017). Title: Draft Genome Sequence of Streptococcus dysgalactiae subsp. equisimilis Strain C161L1 Isolated in Vellore, India.Journal: Genome Announc. Volume: 5 Issue: 19, S-Page: pii: e00336-17 DOI: 10.1128/genomeA.00336-17HZI repositoryPubMed
  • Authors: Duarte,M.; Nielsen,A.; Camarinha-Silva,A.; Vilchez-Vargas,R.; Bruls,T.; Wos-Oxley,M.L.; Jauregui,R.; Pieper,D.H.; ( Year: 2017). Title: Functional soil metagenomics: Elucidation of polycyclic aromatic hydrocarbon degradation potential following 12 years of in situ bioremediation.Journal: Environmental Microbiology Volume: 19 Issue: 8, S-Page: 2992- E-Page: 3011 DOI: 10.1111/1462-2920.13756HZI repositoryPubMed
  • Authors: Amitay,E.L.; Werner,S.; Vital,M.; Pieper,D.H.; Hofler,D.; Gierse,I.J.; Butt,J.; Balavarca,Y.; Cuk,K.; Brenner,H.; ( Year: 2017). Title: Fusobacterium and colorectal cancer: Causal factor or passenger? Results from a large colorectal cancer screening study.Journal: Carcinogenesis Volume: 38 Issue: 8, S-Page: 781- E-Page: 788 DOI: 10.1093/carcin/bgx053PubMed
  • Authors: Camarinha-Silva,A.; Maushammer,M.; Wellmann,R.; Vital,M.; Preuss,S.; Bennewitz,J.; ( Year: 2017). Title: Host genome influence on gut microbial composition and microbial prediction of complex traits in pigs.Journal: Genetics Volume: 206 Issue: 3, S-Page: 1637- E-Page: 1644 DOI: 10.1534/genetics.117.200782HZI repositoryPubMed
  • Authors: Heidrich,B.; Vital,M.; Plumeier,I.; Doscher,N.; Kahl,S.; Kirschner,J.; Ziegert,S.; Solbach,P.; Lenzen,H.; Potthoff,A.; Manns,M.P.; Wedemeyer,H.; Pieper,D.H.; ( Year: 2017). Title: Intestinal microbiota in patients with chronic hepatitis C with and without liver cirrhosis compared to healthy controls.Journal: Liver International Volume: 38 Issue: 1, S-Page: 50- E-Page: 58 DOI: 10.1111/liv.13485PubMed
  • Authors: Truchado,P.; Hernandez-Sanabria,E.; Salden,B.N.; Van den Abbeele,P.; Vilchez-Vargas,R.; Jauregui,R.; Pieper,D.H.; Possemiers,S.; Van De Wiele,T.; ( Year: 2017). Title: Long chain arabinoxylans shift the mucosa-associated microbiota in the proximal colon of the simulator of the human intestinal microbial ecosystem (M-SHIME).Journal: J.Funct.Foods Volume: 32, S-Page: 226- E-Page: 237 DOI: 10.1016/j.jff.2017.02.004 HZI repository WEBURLS
  • Authors: Babbar,A.; Kumar,V.N.; Bergmann,R.; Barrantes,I.; Pieper,D.H.; Itzek,A.; Nitsche-Schmitz,D.P.; ( Year: 2017). Title: Members of a new subgroup of Streptococcus anginosus harbor virulence related genes previously observed in Streptococcus pyogenes.Journal: International Journal of Medical Microbiology Volume: 307 Issue: 3, S-Page: 174- E-Page: 181 DOI: 10.1016/j.ijmm.2017.02.002HZI repositoryPubMed
  • Authors: Adam,I.K.U.; Duarte,M.; Pathmanathan,J.; Miltner,A.; Brüls,T.; Kästner,M.; ( Year: 2017). Title: Microbial communities in pyrene amended soil-compost mixture and fertilized soil.Journal: AMB Express Volume: 7 Issue: 1, S-Page: Article number 7 DOI: 10.1186/s13568-016-0306-9HZI repositoryPubMed
  • Authors: Ruiz,A.; Cerdó,T.; Jauregui,R.; Pieper,D.H.; Marcos,A.; Clemente,A.; Garcia,F.; Margolles,A.; Ferrer,M.; Campoy,C.; Suárez,A.; ( Year: 2017). Title: One-year calorie restriction impacts gut microbial composition but not its metabolic performance in obese adolescents.Journal: Environmental Microbiology Volume: 19 Issue: 4, S-Page: 1536- E-Page: 1551 DOI: 10.1111/1462-2920.13713 HZI repository PubMed
  • Authors: Gottschick,C.; Deng,Z.L.; Vital,M.; Masur,C.; Abels,C.; Pieper,D.H.; Wagner-Döbler,I.; ( Year: 2017). Title: The urinary microbiota of men and women and its changes in women during bacterial vaginosis and antibiotic treatment.Journal: Microbiome. Volume: 5 Issue: 1, S-Page: 99 DOI: 10.1186/s40168-017-0305-3HZI repositoryPubMed
  • Authors: Gottschick,C.; Deng,Z.L.; Vital,M.; Masur,C.; Abels,C.; Pieper,D.H.; Rohde,M.; Mendling,W.; Wagner-Döbler,I.; ( Year: 2017). Title: Treatment of biofilms in bacterial vaginosis by an amphoteric tenside pessary-clinical study and microbiota analysis.Journal: Microbiome. Volume: 5 Issue: 1, S-Page: 119 DOI: 10.1186/s40168-017-0326-yHZI repositoryPubMed
  • Authors: Rath,S.; Heidrich,B.; Pieper,D.H.; Vital,M.; ( Year: 2017). Title: Uncovering the trimethylamine-producing bacteria of the human gut microbiota.Journal: Microbiome. Volume: 5 Issue: 1, S-Page: 54 DOI: 10.1186/s40168-017-0271-9HZI repositoryPubMed
  • Authors: Van den Bossche,L.; Hindryckx,P.; Devisscher,L.; Devriese,S.; Van Welden,S.; Holvoet,T.; Vilchez-Vargas,R.; Vital,M.; Pieper,D.H.; Bussche,J.V.; Vanhaecke,L.; Van De Wiele,T.; De Vos,M.; Laukens,D.; ( Year: 2017). Title: Ursodeoxycholic acid and its taurine- or glycine-conjugated species reduce colitogenic dysbiosis and equally suppress experimental colitis in mice.Journal: Appl.Environ.Microbiol. Volume: 83 Issue: 7, S-Page: e02766-16 DOI: 10.1128/AEM.02766-16HZI repositoryPubMed
  • Authors: Witte,T.; Pieper,D.H.; Heidrich,B.; ( Year: 2017). Title: [Intestinal microbiota in individualized therapies] Die intestinale Mikrobiota als Ansatz für individuelle Therapien.Journal: Internist (Berl) Volume: 58 Issue: 7, S-Page: 682- E-Page: 686 DOI: 10.1007/s00108-017-0259-3HZI repositoryPubMed
  • Authors: Courtens,E.N.; Spieck,E.; Vilchez-Vargas,R.; Bode,S.; Boeckx,P.; Schouten,S.; Jauregui,R.; Pieper,D.H.; Vlaeminck,S.E.; Boon,N.; ( Year: 2016). Title: A robust nitrifying community in a bioreactor at 50 degrees C opens up the path for thermophilic nitrogen removal.Journal: ISME J Volume: 10 Issue: 9, S-Page: 2293- E-Page: 2303 DOI: 10.1038/ismej.2016.8Fulltext HZI repository PubMed
  • Authors: Yakimov,M.M.; Crisafi,F.; Messina,E.; Smedile,F.; Lopatina,A.; Denaro,R.; Pieper,D.H.; Golyshin,P.N.; Giuliano,L.; ( Year: 2016). Title: Analysis of defence systems and a conjugative IncP-1 plasmid in the marine polyaromatic hydrocarbons-degrading bacterium Cycloclasticus sp. 78-ME.Journal: Environ.Microbiol.Rep. Volume: 8 Issue: 4, S-Page: 508- E-Page: 519 DOI: 10.1111/1758-2229.12424HZI repositoryPubMed
  • Authors: Milici,M.; Tomasch,J.; Wos-Oxley,M.L.; Decelle,J.; Jauregui,R.; Wang,H.; Deng,Z.L.; Plumeier,I.; Giebel,H.A.; Badewien,T.H.; Wurst,M.; Pieper,D.H.; Simon,M.; Wagner-Döbler,I.; ( Year: 2016). Title: Bacterioplankton Biogeography of the Atlantic Ocean: A Case Study of the Distance-Decay Relationship.Journal: Front Microbiol. Volume: 7, S-Page: 590 DOI: 10.3389/fmicb.2016.00590HZI repositoryPubMed
  • Authors: Verstraelen,H.; Vilchez-Vargas,R.; Desimpel,F.; Jauregui,R.; Vankeirsbilck,N.; Weyers,S.; Verhelst,R.; De,Sutter P.; Pieper,D.H.; Van de,Wiele T.; ( Year: 2016). Title: Characterisation of the human uterine microbiome in non-pregnant women through deep sequencing of the V1-2 region of the 16S rRNA gene.Journal: PeerJ Volume: 4, S-Page: e1602 DOI: 10.7717/peerj.1602HZI repositoryPubMed
  • Authors: Milici,M.; Deng,Z.L.; Tomasch,J.; Decelle,J.; Wos-Oxley,M.L.; Wang,H.; Jauregui,R.; Plumeier,I.; Giebel,H.A.; Badewien,T.H.; Wurst,M.; Pieper,D.H.; Simon,M.; Wagner-Döbler,I.; ( Year: 2016). Title: Co-occurrence Analysis of Microbial Taxa in the Atlantic Ocean Reveals High Connectivity in the Free-Living Bacterioplankton.Journal: Front Microbiol. Volume: 7, S-Page: 649 DOI: 10.3389/fmicb.2016.00649HZI repositoryPubMed
  • Authors: Giuliani,C.; Marzorati,M.; Innocenti,M.; Vilchez-Vargas,R.; Vital,M.; Pieper,D.H.; Van de,Wiele T.; Mulinacci,N.; ( Year: 2016). Title: Dietary supplement based on stilbenes: a focus on gut microbial metabolism by the in vitro simulator M-SHIME(R).Journal: Food Funct. Volume: 7 Issue: 11, S-Page: 4564- E-Page: 4575 DOI: 10.1039/c6fo00784hPubMed
  • Authors: Ehsani,E.; Barrantes,I.; Vandermaesen,J.; Geffers,R.; Jarek,M.; Boon,N.; Springael,D.; Pieper,D.H.; Vilchez-Vargas,R.; ( Year: 2016). Title: Draft Genome Sequence of Aeromonas sp. Strain EERV15.Journal: Genome Announc. Volume: 4 Issue: 4, S-Page: e00811-16 DOI: 10.1128/genomeA.00811-16HZI repositoryPubMed
  • Authors: Galvez,E.J.; Carrillo-Castro,K.; Zarate,L.; Guiza,L.; Pieper,D.H.; Garcia-Bonilla,E.; Salazar,M.; Junca,H.; ( Year: 2016). Title: Draft Genome Sequence of Bacillus licheniformis CG-B52, a Highly Virulent Bacterium of Pacific White Shrimp (Litopenaeus vannamei), Isolated from a Colombian Caribbean Aquaculture Outbreak.Journal: Genome Announc. Volume: 4 Issue: 3 DOI: 10.1128/genomeA.00321-16HZI repositoryPubMed
  • Authors: Puente-Sánchez,F.; Pieper,D.H.; Arce-Rodríguez,A.; ( Year: 2016). Title: Draft Genome Sequence of the Deep-Subsurface Actinobacterium Tessaracoccus lapidicaptus IPBSL-7T.Journal: Genome Announc. Volume: 4 Issue: 5, S-Page: e01078-16 DOI: 10.1128/genomeA.01078-16.HZI repositoryPubMed
  • Authors: Korsch,M.; Marten,S.M.; Dötsch,A.; Jauregui,R.; Pieper,D.H.; Obst,U.; ( Year: 2016). Title: Effect of dental cements on peri-implant microbial community: comparison of the microbial communities inhabiting the peri-implant tissue when using different luting cements.Journal: Clin.Oral Implants Res. Volume: 27 Issue: 12, S-Page: e161- E-Page: e166 DOI: 10.1111/clr.12582 HZI repository PubMed
  • Authors: Courtens,E.N.P.; Vandekerckhove,T.; Prat,D.; Vilchez-Vargas,R.; Vital,M.; Pieper,D.H.; Meerbergen,K.; Lievens,B.; Boon,N.; Vlaeminck,S.E.; ( Year: 2016). Title: Empowering a mesophilic inoculum for thermophilic nitrification: Growth mode and temperature pattern as critical proliferation factors for archaeal ammonia oxidizers.Journal: Water Res. Volume: 92, S-Page: 94- E-Page: 103 DOI: 10.1016/j.watres.2016.01.022HZI repositoryPubMed
  • Authors: Wos-Oxley,M.L.; Chaves-Moreno,D.; Jauregui,R.; Oxley,A.P.; Kaspar,U.; Plumeier,I.; Kahl,S.; Rudack,C.; Becker,K.; Pieper,D.H.; ( Year: 2016). Title: Exploring the bacterial assemblages along the human nasal passage.Journal: Environmental Microbiology Volume: 18 Issue: 7, S-Page: 2259- E-Page: 2271 DOI: 10.1111/1462-2920.13378HZI repositoryPubMed
  • Authors: Chaves-Moreno,D.; Wos-Oxley,M.L.; Jauregui,R.; Medina,E.; Oxley,A.P.; Pieper,D.H.; ( Year: 2016). Title: Exploring the transcriptome of Staphylococcus aureus in its natural niche.Journal: Sci Rep. Volume: 6, S-Page: 33174 DOI: 10.1038/srep33174HZI repositoryPubMed
  • Authors: Stallmach,A.; Lange,K.; Buening,J.; Sina,C.; Vital,M.; Pieper,D.H.; ( Year: 2016). Title: Fecal Microbiota Transfer in Patients With Chronic Antibiotic-Refractory Pouchitis.Journal: Am J Gastroenterol. Volume: 111 Issue: 3, S-Page: 441- E-Page: 443 DOI: 10.1038/ajg.2015.436HZI repositoryPubMed
  • Authors: Heidrich,B.; Steinmann,E.; Plumeier,I.; Kirschner,J.; Sollik,L.; Ziegert,S.; Engelmann,M.; Lehmann,P.; Manns,M.P.; Pieper,D.H.; Wedemeyer,H.; ( Year: 2016). Title: Frequent detection of HCV RNA and HCVcoreAg in stool of patients with chronic hepatitis C.Journal: J.Clin.Virol. Volume: 80, S-Page: 1- E-Page: 7 DOI: 10.1016/j.jcv.2016.04.006PubMed
  • Authors: Marzorati,M.; Vilchez-Vargas,R.; Bussche,J.V.; Truchado,P.; Jauregui,R.; Hage,R.A.; Pieper,D.H.; Vanhaecke,L.; De Wiele,T.V.; ( Year: 2016). Title: High-fiber and high-protein diets shape different gut microbial communities, which ecologically behave similarly under stress conditions, as shown in a gastrointestinal simulator.Journal: Mol.Nutr.Food Res Volume: 61 Issue: 1 DOI: 10.1002/mnfr.201600150HZI repositoryPubMed
  • Authors: Meerburg,F.A.; Vlaeminck,S.E.; Roume,H.; Seuntjens,D.; Pieper,D.H.; Jauregui,R.; Vilchez-Vargas,R.; Boon,N.; ( Year: 2016). Title: High-rate activated sludge communities have a distinctly different structure compared to low-rate sludge communities, and are less sensitive towards environmental and operational variables.Journal: Water Res Volume: 100, S-Page: 137- E-Page: 145 DOI: 10.1016/j.watres.2016.04.076HZI repositoryPubMed
  • Authors: Van Herreweghen,F.; Van den Abbeele,P.; De Mulder,T.; De Weirdt,R.; Geirnaert,A.; Hernandez-Sanabria,E.; Vilchez-Vargas,R.; Jauregui,R.; Pieper,D.H.; Belzer,C.; de Vos,W.M.; Van De Wiele,T.; ( Year: 2016). Title: In vitro colonisation of the distal colon by Akkermansia muciniphila is largely mucin and pH dependent.Journal: Benef.Microbes Volume: 8 Issue: 1, S-Page: 81- E-Page: 96 DOI: 10.3920/BM2016.0013HZI repositoryPubMed
  • Authors: Borda-Molina,D.; Vital,M.; Sommerfeld,V.; Rodehutscord,M.; Camarinha-Silva,A.; ( Year: 2016). Title: Insights into broilers' gut microbiota fed with phosphorus, calcium, and phytase supplemented diets.Journal: Front.Microbiol. Volume: 7 Issue: DEC, S-Page: Article number 2033 DOI: 10.3389/fmicb.2016.02033HZI repositoryPubMed
  • Authors: Lima-Morales,D.; Jauregui,R.; Camarinha-Silva,A.; Geffers,R.; Pieper,D.H.; Vilchez-Vargas,R.; ( Year: 2016). Title: Linking microbial community and catabolic gene structures during the adaptation of three contaminated soils under continuous long term pollutant stress.Journal: Appl.Environ.Microbiol. Volume: 82 Issue: 7, S-Page: 2227- E-Page: 2237 DOI: 10.1128/AEM.03482-15HZI repositoryPubMed
  • Authors: Milici,M.; Tomasch,J.; Wos-Oxley,M.L.; Wang,H.; Jauregui,R.; Camarinha-Silva,A.; Deng,Z.L.; Plumeier,I.; Giebel,H.A.; Wurst,M.; Pieper,D.H.; Simon,M.; Wagner-Döbler,I.; ( Year: 2016). Title: Low diversity of planktonic bacteria in the tropical ocean.Journal: Sci.Rep. Volume: 6, S-Page: 1- E-Page: 9 DOI: 10.1038/srep19054HZI repositoryPubMed
  • Authors: Grunert,O.; Hernandez-Sanabria,E.; Vilchez-Vargas,R.; Jauregui,R.; Pieper,D.H.; Perneel,M.; Van Labeke,M.C.; Reheul,D.; Boon,N.; ( Year: 2016). Title: Mineral and organic growing media have distinct community structure, stability and functionality in soilless culture systems.Journal: Sci.Rep. Volume: 6, S-Page: Article number 18837 DOI: 10.1038/srep18837HZI repositoryPubMed
  • Authors: De Weirdt,R.; Hernandez-Sanabria,E.; Fievez,V.; Mees,E.; Geirnaert,A.; Van,Herreweghen F.; Vilchez-Vargas,R.; Van den,Abbeele P.; Jauregui,R.; Pieper,D.H.; Vlaeminck,B.; Van de,Wiele T.; ( Year: 2016). Title: Mucosa-associated biohydrogenating microbes protect the simulated colon microbiome from stress associated with high concentrations of poly-unsaturated fat.Journal: Environmental Microbiology Volume: 19 Issue: 2, S-Page: 722- E-Page: 739 DOI: 10.1111/1462-2920.13622HZI repositoryPubMed
  • Authors: Maes,S.; Props,R.; Fitts,J.P.; Smet,R.D.; Vilchez-Vargas,R.; Vital,M.; Pieper,D.H.; Vanhaecke,F.; Boon,N.; Hennebel,T.; ( Year: 2016). Title: Platinum Recovery from Synthetic Extreme Environments by Halophilic Bacteria.Journal: Environ.Sci Technol. Volume: 50 Issue: 5, S-Page: 2619- E-Page: 2626 DOI: 10.1021/acs.est.5b05355PubMed
  • Authors: De Vrieze,J.; Regueiro,L.; Props,R.; Vilchez-Vargas,R.; Jauregui,R.; Pieper,D.H.; Lema,J.M.; Carballa,M.; ( Year: 2016). Title: Presence does not imply activity: DNA and RNA patterns differ in response to salt perturbation in anaerobic digestion.Journal: Biotechnol.Biofuels. Volume: 9, S-Page: 244 DOI: 10.1186/s13068-016-0652-5HZI repositoryPubMed
  • Authors: Arce-Rodríguez,A.; Puente-Sánchez,F.; Avendano,R.; Libby,E.; Rojas,L.; Cambronero,J.C.; Pieper,D.H.; Timmis,K.N.; Chavarria,M.; ( Year: 2016). Title: Pristine but metal-rich Rio Sucio (Dirty River) is dominated by Gallionella and other iron-sulfur oxidizing microbes.Journal: Extremophiles Volume: 21 Issue: 2, S-Page: 235- E-Page: 243 DOI: 10.1007/s00792-016-0898-7 HZI repository PubMed
  • Authors: Coma,M.; Vilchez-Vargas,R.; Roume,H.; Jauregui,R.; Pieper,D.H.; Rabaey,K.; ( Year: 2016). Title: Product Diversity Linked to Substrate Usage in Chain Elongation by Mixed-Culture Fermentation.Journal: Environ.Sci.Technol. Volume: 50 Issue: 12, S-Page: 6467- E-Page: 6476 DOI: 10.1021/acs.est.5b06021PubMed
  • Authors: Salden,B.N.; Troost,F.J.; Wilms,E.; Truchado,P.; Vilchez-Vargas,R.; Pieper,D.H.; Jáuregui,R.; Marzorati,M.; Van De Wiele,T.; Possemiers,S.; Masclee,A.A.; ( Year: 2016). Title: Reinforcement of intestinal epithelial barrier by arabinoxylans in overweight and obese subjects: A randomized controlled trial. Arabinoxylans in gut barrier.Journal: Clin.Nutr. DOI: 10.1016/j.clnu.2017.01.024PubMed
  • Authors: Medina,E.; Pieper,D.H.; ( Year: 2016). Title: Tackling Threats and Future Problems of Multidrug-Resistant Bacteria.Journal: Curr Top.Microbiol.Immunol. Volume: 398, S-Page: 3- E-Page: 34 PubMed
  • Authors: Schulz,C.; Schütte,K.; Koch,N.; Vilchez-Vargas,R.; Wos-Oxley,M.L.; Oxley,A.P.; Vital,M.; Malfertheiner,P.; Pieper,D.H.; ( Year: 2016). Title: The active bacterial assemblages of the upper GI tract in individuals with and without Helicobacter infection.Journal: GUT Volume: 67 Issue: 2, S-Page: 216- E-Page: 225 DOI: 10.1136/gutjnl-2016-312904HZI repositoryPubMed
  • Authors: Kaspar,U.; Kriegeskorte,A.; Schubert,T.; Peters,G.; Rudack,C.; Pieper,D.H.; Wos-Oxley,M.; Becker,K.; ( Year: 2016). Title: The culturome of the human nose habitats reveals individual bacterial fingerprint patterns.Journal: Environmental Microbiology Volume: 18 Issue: 7, S-Page: 2130- E-Page: 2142 DOI: 10.1111/1462-2920.12891HZI repositoryPubMed
  • Authors: De Vrieze,J.; Raport,L.; Roume,H.; Vilchez-Vargas,R.; Jáuregui,R.; Pieper,D.H.; Boon,N.; ( Year: 2016). Title: The full-scale anaerobic digestion microbiome is represented by specific marker populations.Journal: Water Res. Volume: 104, S-Page: 101- E-Page: 110 DOI: 10.1016/j.watres.2016.08.008PubMed
  • Authors: Lassek,C.; Burghartz,M.; Chaves-Moreno,D.; Otto,A.; Hentschker,C.; Fuchs,S.; Bernhardt,J.; Jauregui,R.; Neubauer,R.; Becher,D.; Pieper,D.H.; Jahn,M.; Jahn,D.; Riedel,K.; ( Year: 2015). Title: A metaproteomics approach to elucidate host and pathogen protein expression during catheter-associated urinary tract infections (CAUTIs).Journal: Mol.Cell.Proteomics Volume: 14 Issue: 4, S-Page: 989- E-Page: 1008 DOI: 10.1074/mcp.M114.043463HZI repositoryPubMed
  • Authors: Vital,M.; Harkema,J.R.; Rizzo,M.; Tiedje,J.; Brandenberger,C.; ( Year: 2015). Title: Alterations of the Murine Gut Microbiome with Age and Allergic Airway Disease.Journal: J Immunol.Res Volume: 2015, S-Page: 892568 DOI: 10.1155/2015/892568HZI repositoryPubMed
  • Authors: Kümmel,S.; Herbst,F.A.; Bahr,A.; Duarte,M.; Pieper,D.H.; Jehmlich,N.; Seifert,J.; von Bergen,M.; Bombach,P.; Richnow,H.H.; Vogt,C.; ( Year: 2015). Title: Anaerobic naphthalene degradation by sulfatereducing Desulfobacteraceae from various anoxic aquifers.Journal: Fems Microbiology Ecology Volume: 91 Issue: 3 DOI: 10.1093/femsec/fiv006HZI repositoryPubMed
  • Authors: Chaves-Moreno,D.; Wos-Oxley,M.L.; Jauregui,R.; Medina,E.; Oxley,A.P.; Pieper,D.H.; ( Year: 2015). Title: Application of a Novel "Pan-Genome"-Based Strategy for Assigning RNAseq Transcript Reads to Staphylococcus aureus Strains.Journal: PLoS ONE Volume: 10 Issue: 12, S-Page: e0145861 DOI: 10.1371/journal.pone.0145861HZI repositoryPubMed
  • Authors: Lopez-Fernandez,M.; Cherkouk,A.; Vilchez-Vargas,R.; Jauregui,R.; Pieper,D.; Boon,N.; Sanchez-Castro,I.; Merroun,M.L.; ( Year: 2015). Title: Bacterial Diversity in Bentonites, Engineered Barrier for Deep Geological Disposal of Radioactive Wastes.Journal: Microb.Ecol. Volume: 70 Issue: 4, S-Page: 922- E-Page: 935 DOI: 10.1007/s00248-015-0630-7HZI repositoryPubMed
  • Authors: Fiebig,A.; Loof,T.G.; Babbar,A.; Itzek,A.; Koehorst,J.J.; Schaap,P.J.; Nitsche-Schmitz,D.P.; ( Year: 2015). Title: Comparative Genomics of Streptococcus pyogenes M1 isolates differing in virulence and propensity to cause systemic infection in mice.Journal: International Journal of Medical Microbiology Volume: 305 Issue: 6, S-Page: 532- E-Page: 543 WEBURLS
  • Authors: de Lima-Morales,D.; Chaves-Moreno,D.; Wos-Oxley,M.L.; Jauregui,R.; Vilchez-Vargas,R.; Pieper,D.H.; ( Year: 2015). Title: Degradation of benzene by Pseudomonas veronii 1YdBTEX2 and 1YB2 is catalyzed by enzymes encoded in distinct catabolic gene clusters.Journal: Appl.Environ.Microbiol. Volume: 82, S-Page: 167- E-Page: 173 DOI: 10.1128/AEM.03026-15HZI repositoryPubMed
  • Authors: Ehsani,E.; Jauregui,R.; Geffers,R.; Jareck,M.; Boon,N.; Pieper,D.H.; Vilchez-Vargas,R.; ( Year: 2015). Title: Draft Genome Sequence of Rhodococcus sp. Strain 311R.Journal: Genome Announc. Volume: 3 Issue: 3 DOI: 10.1128/genomeA.00378-15.HZI repositoryPubMed
  • Authors: Burbach,K.; Seifert,J.; Pieper,D.H.; Camarinha-Silva,A.; ( Year: 2015). Title: Evaluation of DNA extraction kits and phylogenetic diversity of the porcine gastrointestinal tract based on Illumina sequencing of two hypervariable regions.Journal: Microbiologyopen. Volume: 5, S-Page: 70- E-Page: 82 DOI: 10.1002/mbo3.312HZI repositoryPubMed
  • Authors: Ehsani,E.; Jauregui,R.; Geffers,R.; Jarek,M.; Boon,N.; Pieper,D.H.; Vilchez-Vargas,R.; ( Year: 2015). Title: First Draft Genome Sequence of the Acidovorax caeni sp. nov. Type Strain R-24608 (DSM 19327).Journal: Genome Announc. Volume: 3 Issue: 6 PubMed
  • Authors: Schulz,C.; Koch,N.; Schutte,K.; Pieper,D.H.; Malfertheiner,P.; ( Year: 2015). Title: H. pylori and its modulation of gastrointestinal microbiota.Journal: J Dig.Dis. Volume: 16, S-Page: 109- E-Page: 117 PubMed
  • Authors: Pérez-Pantoj,D.; Leiva-Novoa,P.; Donoso,R.A.; Little,C.; Godoy,M.; Pieper,D.H.; Gonzáleza,B.; ( Year: 2015). Title: Hierarchy of carbon source utilization in soil bacteria: Hegemonic preference for benzoate in complex aromatic compound mixtures degraded by Cupriavidus pinatubonensis strain JMP134.Journal: Appl.Environ.Microbiol. Volume: 81 Issue: 12, S-Page: 3914- E-Page: 3924 WEBURLS
  • Authors: Szafranski,S.P.; Wos-Oxley,M.L.; Vilchez-Vargas,R.; Jauregui,R.; Plumeier,I.; Klawonn,F.; Tomasch,J.; Meisinger,C.; Kühnisch,J.; Sztajer,H.; Pieper,D.H.; Wagner-Döbler,I.; ( Year: 2015). Title: High-resolution taxonomic profiling of the subgingival microbiome for biomarker discovery and periodontitis diagnosis.Journal: Appl.Environ.Microbiol. Volume: 81 Issue: 3, S-Page: 1047- E-Page: 1058 DOI: 10.1128/AEM.03534-14HZI repositoryPubMed
  • Authors: Lunsmann,V.; Kappelmeyer,U.; Benndorf,R.; Martinez-Lavanchy,P.M.; Taubert,A.; Adrian,L.; Duarte,M.; Pieper,D.H.; von,Bergen M.; Muller,J.A.; Heipieper,H.J.; Jehmlich,N.; ( Year: 2015). Title: In-situ Protein-SIP highlights Burkholderiaceae as key players degrading toluene by para ring hydroxylation in a constructed wetland model.Journal: Environmental Microbiology Volume: 18 Issue: 4, S-Page: 1176- E-Page: 1186 DOI: 10.1111/1462-2920.13133PubMed
  • Authors: Martínez-Lavanchy,P.M.; Chen,Z.; Lünsmann,V.; Marin-Cevada,V.; Vilchez-Vargas,R.; Pieper,D.H.; Reiche,N.; Kappelmeyer,U.; Imparato,V.; Junca,H.; Nijenhuis,I.; Müller,J.A.; Kuschk,P.; Heipieper,H.J.; ( Year: 2015). Title: Microbial toluene removal in hypoxic model constructed wetlands occurs predominantly via the ring monooxygenation pathway.Journal: Appl.Environ.Microbiol. Volume: 81 Issue: 18, S-Page: 6241- E-Page: 6252 WEBURLS
  • Authors: Chaves-Moreno,D.; Plumeier,I.; Kahl,S.; Krismer,B.; Peschel,A.; Oxley,A.P.; Jauregui,R.; Pieper,D.H.; ( Year: 2015). Title: The microbial community structure of the cotton rat nose.Journal: Environ.Microbiol.Rep. Volume: 7, S-Page: 929- E-Page: 935 PubMed
  • Authors: Jimenez,D.J.; Chaves-Moreno,D.; van Elsas,J.D.; ( Year: 2015). Title: Unveiling the metabolic potential of two soil-derived microbial consortia selected on wheat straw.Journal: Sci Rep. Volume: 5, S-Page: 13845 DOI: 10.1038/srep13845HZI repositoryPubMed
  • Authors: Duarte,M.; Jauregui,R.; Vilchez-Vargas,R.; Junca,H.; Pieper,D.H.; ( Year: 2014). Title: AromaDeg, a novel database for phylogenomics of aerobic bacterial degradation of aromatics.Journal: Database.(Oxford) Volume: 2014 DOI: 10.1093/database/bau118HZI repositoryPubMed
  • Authors: Camarinha-Silva,A.; Jauregui,R.; Chaves-Moreno,D.; Oxley,A.P.A.; Schaumburg,F.; Becker,K.; Wos,M.L.*; Pieper,D.H.; ( Year: 2014). Title: Comparing the anterior nare bacterial community of two discrete human populations using Illumina amplicon sequencing.Journal: Environmental Microbiology Volume: 16 Issue: 9, S-Page: 2939- E-Page: 2952 DOI: 10.1111/1462-2920.12362HZI repositoryPubMed
  • Authors: Jauregui,Ruy; Rodelas,B.; Geffers,Robert; Boon,N.; Pieper,Dietmar H.; Vilchez-Vargas,Ramiro; ( Year: 2014). Title: Draft Genome Sequence of the Naphthalene Degrader Herbaspirillum sp. Strain RV1423.Journal: Genome Announcement Volume: 2 Issue: 2 PubMed
  • Authors: Szafranska,A.K.; Oxley,A.P.A.; Chaves-Moreno,D.; Horst,S.A.; Roßlenbroich,S.; Peters,G.; Goldmann,O.; Rohd,M.; Sinha,B.; Pieper,D.H.; Löffler,B.; Jauregui,R.; Wos-Oxley,M.L.; Medina,E.; ( Year: 2014). Title: High-resolution transcriptomic analysis of the adaptive response of staphylococcus aureus during acute and chronic phases of osteomyelitis.Journal: MBio Volume: 5 Issue: 6, S-Page: e01775 DOI: 10.1128/mBio.01775-14HZI repositoryPubMed
  • Authors: De,Vrieze J.; Gildemyn,S.; Vilchez-Vargas,R.; Jauregui,R.; Pieper,Dietmar H.; Verstraete,W.; Boon,N.; ( Year: 2014). Title: Inoculum selection is crucial to ensure operational stability in anaerobic digestion.Journal: Applied Microbiology and Biotechnology Volume: 99, S-Page: 189- E-Page: 199 PubMed
  • Authors: Mehraj,J.; Akmatov,M.K.; Strömpl,J.; Gatzemeier,A.; Layer,F.; Werner,G.; Pieper,D.H.; Medina,E.; Witte,W.; Pessler,F.; Krause,G.; ( Year: 2014). Title: Methicillin-Sensitive and Methicillin-Resistant Staphylococcus aureus Nasal Carriage in a Random Sample of Non-Hospitalized Adult Population in Northern Germany.Journal: PLoS ONE Volume: 9 Issue: 9, S-Page: e107937 DOI: 10.1371/journal.pone.0107937HZI repositoryPubMed
  • Authors: Kerckhof,F.M.; Courtens,E.N.P.; Geirnaert,A.; Hoefman,S.; Ho,A.; Vilchez-Vargas,R.; Pieper,Dietmar H.; Jauregui,Ruy; Vlaeminck,S.E.; Van De Wiele,T.; Vandamme,P.; Heylen,K.; Boon,N.; ( Year: 2014). Title: Optimized cryopreservation of mixed microbial communities for conserved functionality and diversity.Journal: PLoS ONE Volume: 9 Issue: 6, S-Page: e99517 DOI: 10.1371/journal.pone.0099517HZI repositoryPubMed
  • Authors: Gomez-Silvan,C.; Vilchez-Vargas,R.; Arevalo,J.; Gomez,M.A.; Gonzalez-Lopez,J.; Pieper,D.H.; Rodelas,B.; ( Year: 2014). Title: Quantitative response of nitrifying and denitrifying communities to environmental variables in a full-scale membrane bioreactor.Journal: Bioresour.Technol. Volume: 169, S-Page: 126- E-Page: 133 PubMed
  • Authors: Courtens,E.N.; Vlaeminck,S.E.; Vilchez-Vargas,Ramiro; Verliefde,A.; Jauregui,Ruy; Pieper,Dietmar H.; Boon,N.; ( Year: 2014). Title: Trade-off between mesophilic and thermophilic denitrification: Rates vs. sludge production, settleability and stability.Journal: Water Research Volume: 63C, S-Page: 234- E-Page: 244 PubMed
  • Authors: Naveen,Kumar,V; van der,Linden M.; Menon,T.; Nitsche-Schmitz,D.Patric; ( Year: 2014). Title: Viridans and bovis group streptococci that cause infective endocarditis in two regions with contrasting epidemiology.Journal: International Journal of Medical Microbiology Volume: 304 Issue: 3-4, S-Page: 262- E-Page: 268 PubMed
  • Authors: Vilchez-Vargas,Ramiro; Geffers,Robert; Suarez-Diez,Maria; Conte,Ianina; Waliczek,Agnes; Kaser,Vanessa S.; Kralova,M.; Junca,H.; Pieper,Dietmar H.; ( Year: 2013). Title: Analysis of the microbial gene landscape and transcriptome for aromatic pollutants and alkane degradation using a novel internally calibrated microarray system.Journal: Environmental Microbiology Volume: 15 Issue: 4, S-Page: 1016- E-Page: 1039 DOI: 10.1126/scitranslmed.3009925HZI repositoryPubMed
  • Authors: Schmidt,E.; Mandt,C.; Janssen,D.B.; Pieper,Dietmar H.*; Reineke,W.; ( Year: 2013). Title: Degradation of chloroaromatics: structure and catalytic activities of wild-type chlorocatechol 2,3-dioxygenases and modified ones.Journal: Environmental Microbiology Volume: 15 Issue: 1, S-Page: 183- E-Page: 190 DOI: 10.1111/j.1462-2920.2012.02831.xPubMed
  • Authors: de Lima-Morales,D.; Chaves-Moreno,D.; Jarek,M.; Vilchez-Vargas,R.; Jauregui,R.; Pieper,D.H.; ( Year: 2013). Title: Draft Genome Sequence of Pseudomonas veronii Strain 1YdBTEX2.Journal: Genome Announcement Volume: 1 Issue: 3 DOI: 10.1128/genomeA.00258-13HZI repositoryPubMed
  • Authors: Herbst,F.A.; Bahr,A.; Duarte,M.; Pieper,D.H.; Richnow,H.H.; von Bergen,M.; Seifert,J.; Bombach,P.; ( Year: 2013). Title: Elucidation of in situ polycyclic aromatic hydrocarbon degradation by functional metaproteomics (protein-SIP).Journal: Proteomics Volume: 13 Issue: 18-19, S-Page: 2910- E-Page: 2920 WEBURLS
  • Authors: de Lorenzo,V; Pieper,Dietmar*; Ramos,J.L.; ( Year: 2013). Title: From the test tube to the environment - and back.Journal: Environmental Microbiology Volume: 15 Issue: 1, S-Page: 6- E-Page: 11 DOI: 10.1111/j.1462-2920.2012.02896.xHZI repositoryPubMed
  • Authors: Oosterkamp,M.J.; Veuskens,T.; Talarico Saia,F.; Weelink,S.A.B.; Goodwin,L.A.; Daligault,H.E.; Bruce,D.C.; Detter,J.C.; Tapia,R.; Han,C.S.; Land,M.L.; Hauser,L.J.; Langenhoff,A.A.M.; Gerritse,J.; van Berkel,W.J.H.; Pieper,Dietmar H.; Junca,H.; Smidt,H.; Schraa,G.; Davids,M.; Schaap,P.J.; Plugge,C.M.; Stams,A.J.M.; ( Year: 2013). Title: Genome Analysis and Physiological Comparison of Alicycliphilus denitrificans Strains BC and K601T.Journal: PLoS ONE Volume: 8 Issue: 6, S-Page: e66971 WEBURLS
  • Authors: Guazzaroni,M.E.; Herbst,F.A.; Lores,I.; Tamames,J.; Pelaez,A.I.; Lopez-Cortes,N.; Alcaide,M.; Del Pozo,M.V.; Vieites,J.M.; von,Bergen M.; Gallego,J.L.; Bargiela,R.; Lopez-Lopez,A.; Pieper,Dietmar H.*; Rossello-Mora,R.; Sanchez,J.; Seifert,J.; Ferrer,M.; ( Year: 2013). Title: Metaproteogenomic insights beyond bacterial response to naphthalene exposure and bio-stimulation.Journal: ISME Journal Volume: 7 Issue: 1, S-Page: 122- E-Page: 136 DOI: 10.1038/ismej.2012.82HZI repositoryPubMed
  • Authors: Alcaide,M.; Tornes,J.; Stogios,P.J.; Xu,X.; Gertler,C.; Di,Leo R.; Bargiela,R.; Lafraya,A.; Guazzaroni,M.E.; Lopez-Cortes,N.; Chernikova,T.N.; Golyshina,O.V.; Nechitaylo,T.Y.; Plumeier,Iris; Pieper,Dietmar H.; Yakimov,M.M.; Savchenko,A.; Golyshin,P.N.; Ferrer,M.; ( Year: 2013). Title: Single residues dictate the co-evolution of dual esterases: MCP hydrolases from the alpha/beta hydrolase family.Journal: Biochemical Journal Volume: 454 Issue: 1, S-Page: 157- E-Page: 166 PubMed
  • Authors: Wos-Oxley,M.; Bleich,A.; Oxley,A.P.; Kahl,S.; Janus,L.; Smoczek,A.; Nahrstedt,H.; Pils,M.; Taudien,S.; Platzer,M.; Hedrich,H.J.; Medina,Eva*; Pieper,Dietmar*; ( Year: 2012). Title: Comparative evaluation of establishing a human gut microbial community within rodent models.Journal: Gut Microbes Volume: 3 Issue: 3 PubMed
  • Authors: Marin,M.; Plumeier,I.; Pieper,Dietmar H.*; ( Year: 2012). Title: Degradation of 2,3-dihydroxybenzoate by a novel meta-cleavage pathway.Journal: Journal of Bacteriology Volume: 194 Issue: 15, S-Page: 3851- E-Page: 3860 DOI: 10.1128/JB.00430-12HZI repositoryPubMed
  • Authors: Perez-Pantoja,D.; Donoso,R.; Agullo,L.; Cordova,M.; Seeger,M.; Pieper,Dietmar H.*; Gonzalez,B.; ( Year: 2012). Title: Genomic analysis of the potential for aromatic compounds biodegradation in Burkholderiales.Journal: Environmental Microbiology Volume: 14 Issue: 5, S-Page: 1091- E-Page: 1117 DOI: 10.1111/j.1462-2920.2011.02613.xHZI repositoryPubMed
  • Authors: Buchler,G.; Wos-Oxley,M.L.; Smoczek,A.; Zschemisch,N.H.; Neumann,D.; Pieper,Dietmar H.*; Hedrich,H.J.; Bleich,A.; ( Year: 2012). Title: Strain-specific colitis susceptibility in IL10-deficient mice depends on complex gut microbiota-host interactions.Journal: Inflammatory Bowel Diseases Volume: 18 Issue: 5, S-Page: 943- E-Page: 954 PubMed
  • Authors: Camarinha-Silva,A.; Jáuregui,R.; Pieper,Dietmar H.*; Wos-Oxley,M.L.; ( Year: 2012). Title: The temporal dynamics of bacterial communities across human anterior nares.Journal: Environmental Microbiology Reports Volume: 4 Issue: 1, S-Page: 126- E-Page: 132
  • Authors: Camarinha-Silva,A.; Wos-Oxley,M.L.; Jauregui,R.; Becker,K.; Pieper,Dietmar H.; ( Year: 2012). Title: Validating T-RFLP as a sensitive and high-throughput approach to assess bacterial diversity patterns in human anterior nares.Journal: Fems Microbiology Ecology Volume: 79 Issue: 1, S-Page: 98- E-Page: 108 PubMed
  • Authors: Becker,K.; Mutter,W.; Daniel,R.; Rudack,C.; Peschel,A.; Pieper,Dietmar*; ( Year: 2011). Title: Bakterielle Untermieter in der menschlichen Nase.Journal: GenomXPress
  • Authors: Vilchez,Ramiro*; Gomez-Silvan,C.; Purswani,J.; Gonzalez-Lopez,J.; Rodelas,B.; ( Year: 2011). Title: Characterization of bacterial communities exposed to Cr(III) and Pb(II) in submerged fixed-bed biofilms for groundwater treatment.Journal: Ecotoxicology Volume: 20 Issue: 4, S-Page: 779- E-Page: 792 DOI: 10.1007/s10646-011-0629-xHZI repositoryPubMed
  • Authors: Oosterkamp,M.J.; Veuskens,T.; Plugge,C.M.; Langenhoff,A.A.; Gerritse,J.; van Berkel,W.J.; Pieper,Dietmar H.*; Junca,H.; Goodwin,L.A.; Daligault,H.E.; Bruce,D.C.; Detter,J.C.; Tapia,R.; Han,C.S.; Land,M.L.; Hauser,L.J.; Smidt,H.; Stams,A.J.; ( Year: 2011). Title: Genome sequences of Alicycliphilus denitrificans strains BC and K601T.Journal: Journal of Bacteriology Volume: 193 Issue: 18, S-Page: 5028- E-Page: 5029 DOI: 10.1128/JB.00365-11HZI repositoryPubMed
  • Authors: Duarte,M.; Ferreira-da-Silva,F.; Lünsdorf,H.; Junca,H.; Gales,L.; Pieper,D.H.; Nunes,O.C.; ( Year: 2011). Title: Gulosibacter molinativorax ON4T molinate hydrolase, a novel cobalt-dependent amidohydrolase.Journal: Journal of Bacteriology Volume: 193 Issue: 20, S-Page: 5810- E-Page: 5816 DOI: 10.1128/JB.05054-11HZI repositoryPubMed
  • Authors: Pfingsten-Würzburg,S.; Pieper,Dietmar*; Bautsch,W.; Probst-Kepper,M.; ( Year: 2011). Title: Prevalence and molecular epidemiology of meticillin-resistant Staphylococcus aureus in nursing home residents in northern Germeny.Journal: Journal of Hospital Infection Volume: 78 Issue: 2, S-Page: 108- E-Page: 112
  • Authors: Wos-Oxley,M.L.; Plumeier,I.; von,Eiff C.; Taudien,S.; Platzer,M.; Vilchez-Vargas,R.; Becker,K.; Pieper,Dietmar H.*; ( Year: 2010). Title: A poke into the diversity and associations within human anterior nare microbial communities.Journal: ISME Journal Volume: 4 Issue: 7, S-Page: 839- E-Page: 851 PubMed
  • Authors: Gomes,N.C.; Flocco,C.G.; Costa,R.; Junca,H.; Vilchez,R.; Pieper,Dietmar H.*; Krogerrecklenfort,E.; Paranhos,R.; Mendonca-Hagler,L.C.; Smalla,K.; ( Year: 2010). Title: Mangrove microniches determine the structural and functional diversity of enriched petroleum hydrocarbon-degrading consortia.Journal: Fems Microbiology Ecology Volume: 74 Issue: 2, S-Page: 276- E-Page: 290 PubMed
  • Authors: Vilchez-Vargas,R.; Junca,H.; Pieper,Dietmar H.*; ( Year: 2010). Title: Metabolic networks, microbial ecology and 'omics' technologies: towards understanding in situ biodegradation processes.Journal: Environental Microbiology Volume: 12 Issue: 12, S-Page: 3089- E-Page: 3104 PubMed
  • Authors: Marin,M.; Perez-Pantoja,D.; Donoso,R.; Wray,Victor*; Gonzalez,B.; Pieper,Dietmar H.*; ( Year: 2010). Title: Modified 3-oxoadipate pathway for the biodegradation of methylaromatics in Pseudomonas reinekei MT1.Journal: Journal of Bacteriology Volume: 192 Issue: 6, S-Page: 1543- E-Page: 1552 DOI: 10.1128/JB.01208-09HZI repositoryPubMed
  • Authors: Perez-Pantoja,D.; Gonzalez,B.; Pieper,Dietmar H.*; ( Year: 2009). Title: Aerobic degradation of aromatic hydrocarbons.Book Title: Handbook of Hydrocarbon and Lipid Microbiology Editors: Timmis,K.N.; (Ed.). Publisher: Springer, S-Page: 800- E-Page: 829
  • Authors: Pieper,Dietmar H.*; Gonzalez,B.; Camara,B.; Perez-Pantoja,D.; Reineke,W.; ( Year: 2009). Title: Aerobic degradation of chloroaromatics.Book Title: Handbook of Hydrocarbon and Lipid Microbiology Editors: Timmis,K.N.; (Ed.). Publisher: Springer, S-Page: 840- E-Page: 859
  • Authors: Camara,B.; Nikodem,P.; Bielecki,P.; Bobadilla,R.; Junca,H.; Pieper,Dietmar.H.*; ( Year: 2009). Title: Characterization of a gene cluster involved in 4-chlorocatechol degradation by Pseudomonas reinekei MT1.Journal: Journal of Bacteriology Volume: 191 Issue: 15, S-Page: 4905- E-Page: 4915 PubMed
  • Authors: Scheithauer,B.K.; Wos-Oxley,M.L.; Ferslev,B.; Jablonowski,H.; Pieper,Dietmar H.*; ( Year: 2009). Title: Characterization of the complex bacterial communities colonizing biliary stents reveals a host-dependent diversity.Journal: ISME Journal Volume: 3 Issue: 7, S-Page: 797- E-Page: 807 PubMed
  • Authors: Marin,M.; Heinz,Dirk W.*; Pieper,Dietmar H.*; Klink,B.U.; ( Year: 2009). Title: Crystal structure and catalytic mechanism of 4-methylmuconolactone methylisomerase.Journal: Journal of Biological Chemistry Volume: 284 Issue: 47, S-Page: 32709- E-Page: 32716 PubMed
  • Authors: Kunze,M.; Zerlin,K.F.; Retzlaff,A.; Pohl,J.O.; Schmidt,E.; Janssen,D.B.; Vilchez-Vargas,R.; Pieper,Dietmar H.*; Reineke,W.; ( Year: 2009). Title: Degradation of chloroaromatics by Pseudomonas putida GJ31: assembled route for chlorobenzene degradation encoded by clusters on plasmid pKW1 and the chromosome.Journal: Microbiology Volume: 155 Issue: Pt 12, S-Page: 4069- E-Page: 4083 DOI: 10.1099/mic.0.032110-0PubMed
  • Authors: Kabelitz,N.; Machackova,J.; Imfeld,G.; Brennerova,M.; Pieper,Dietmar H.*; Heipieper,H.J.; Junca,H.; ( Year: 2009). Title: Enhancement of the microbial community biomass and diversity during air sparging bioremediation of a soil highly contaminated with kerosene and BTEX.Journal: Applied Microbiology and Biotechnology Volume: 82 Issue: 3, S-Page: 565- E-Page: 577 PubMed
  • Authors: Junca,H.; Pieper,Dietmar H.*; ( Year: 2009). Title: Functional marker gene assays for hydrocarbon degrading microbial communities - aerobic.Book Title: Handbook of Hydrocarbon and Lipid Microbiology Editors: Timmis,K.N.; (Ed.). Publisher: Springer, S-Page: 4291- E-Page: 4305
  • Authors: Seeger,M.; Pieper,Dietmar H.*; ( Year: 2009). Title: Genetics of biphenyl biodegradation and co-metabolism of PCBs.Book Title: Handbook of Hydrocarbon and Lipid Microbiology Editors: Timmis,K.N.; (Ed.). Publisher: Springer, S-Page: 1180- E-Page: 1194
  • Authors: Brennerova,M.V.; Josefiova,J.; Brenner,V.; Pieper,Dietmar H.*; Junca,H.; ( Year: 2009). Title: Metagenomics reveals diversity and abundance of meta-cleavage pathways in microbial communities from soil highly contaminated with jet fuel under air sparging bioremediation.Journal: Environental Microbiology Volume: 11 Issue: 9, S-Page: 2216- E-Page: 2227 DOI: 10.1111/J.1462-2920.2009.01943x
  • Authors: Palleroni,N.; Pieper,Dietmar H.*; ( Year: 2009). Title: Microbiology of hydrocarbon-degrading.Book Title: Handbook of Hydrocarbon and Lipid Microbiology Editors: Timmis,K.N.; (Ed.). Publisher: Springer, S-Page: 1788- E-Page: 1796
  • Authors: Marin,M.; Pieper,Dietmar H.*; ( Year: 2009). Title: Novel metal-binding site of.Journal: Biochemical and Biophysical Research Communications Volume: 390 Issue: 4, S-Page: 1345- E-Page: 1348 DOI: 10.1016/j.bbrc.2009.10.151HZI repositoryPubMed
  • Authors: Perez-Pantoja,D.; Gonzalez,B.; Pieper,Dietmar H.*; ( Year: 2009). Title: Phylogenomics of aerobic bacterial degradation of aromatics.Book Title: Handbook of Hydrocarbon and Lipid Microbiology Editors: Timmis,K.N.; (Ed.). Publisher: Springer, S-Page: 1356- E-Page: 1391
  • Authors: Vílchez,R.; Pozo,C.; Gómez,M.A.; Rodelas,B.; Gonzáles-López,J.; ( Year: 2007). Title: Dominance of sphingomonads in a copper-exposed biofilm community for groundwater water treatment.Journal: Microbiology Volume: 153 Issue: 2, S-Page: 325- E-Page: 337 DOI: 10.1099/mic.0.2006/002139-0WEBURLS

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  • Staphylococcus aureus – der Feind in meiner NaseEin kräftiger Nieser und der Luftdruck katapultiert Millionen von Bakterien aus unserer Nase. Auch wenn wir keinen Schnupfen haben. Ein häufiger Nasenbewohner ist Staphylococcus aureus und wenn der mit dem Luftstoß zufällig auf eine Wunde trifft, haben wir ein Problem… Dietmar Pieper und sein Team wollen wissen, wer noch so alles in unserer Nase lebt – und was wir gegen unerwünschte Bewohner wie Staphylococcus aureus unternehmen können.
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