Computational Biology of Infection Research
PhyloPythiaS+ - a self-training method for the rapid reconstruction of low-ranking taxonomic bins from metagenomes
PhyloPythiaS - the PhyloPythiaS Web Server for Taxonomic Assignment of Metagenome Sequences.
Taxator-tk performs taxonomic sequence assignment by fast approximate determination of evolutionary neighbors from sequence similarities.
AdaPatch is a method for detecting positively selected patches of sites on the surface of viral proteins, which are likely candidates for being relevant for adaptive evolution.
SDplots: software for the detection of selective sweeps to monitor the adaptation of influenza A viruses
SDplots VaccineUpdates: results of the bi-annual vaccine strain prediction for influenza A viruses
PatchDetection: software for the detection of protein patches under positive selection
Phylogeography: software for phylogeographical reconstruction to infer origin and spread routes of viral pathogen outbreaks
FrechetTreeDistances: distances between phylogeographic reconstructions across tree topologies.
DiTaxa: nucleotide-pair encoding of 16S rRNA sequences for host phenotype and biomarker detection
CAMISIM: Simulating metagenomes and microbial communities
AMBER: Assessment of Metagenome BinnERs
OPAL: Open-community Profiling Assessment tooL
CAMITAX: Taxon labels for microbial genomes