Antiviral and Antivirulence Drugs

Work in the Empting lab focuses on tackling innovative and difficult-to-address anti-infective targets such as bacterial virulence regulatory systems as well as un(der)explored anti-herpesviral persitance mediators. By this, we aspire to circumvent common resistance mechanisms and to refill the dried out development pipeline. This group is located at the Helmholtz Institute for Pharmaceutical Research Saarland (HIPS)

Leader

Projects

Targeting Bacterial Pathogenicity (Pathoblockers)

With the aim to devise novel treatment modalities and to divert from classical bactericidal or bacteriostatic antibiotics, we design and optimize synthetic molecules, which specifically block bacterial pathogenicity traits. In this regard, we address transcriptional and post-transcriptional regulators of bacterial virulence. By this means, we interfere with a multitude of virulence factors and do not interfere with bacterial viability. The overall aim of the project is to discover and advance compounds for the treatment of Pseudomonas aeruginosa infections, which is a problematic ESKAPE pathogen and the major cause of morbidity and mortality in patients with cystic fibrosis. To this end, we address to regulator systems: A) the Pseudomonas quinolone signal (PQS) quorum sensing (QS) system and B) the carbon storage regulator (Csr; also called regulator of secondary metabolites, Rsm) system.

A) QS provides a way for bacteria to communicate with each other via small diffusible signal molecules. This ability is essential for population-wide coordination of infection processes. We target the signal molecule receptor and transcriptional regulator PqsR (MvfR) by compounds acting as inverse agonists. The PQS QS system is quite unique resulting in a pathogen-specific mode-of-action, which preserves the commensal (beneficial) microbiota. By means, we successfully achieved lead status with three chemical classes of pathoblockers showing promising potency in the nanomolar range combined with a suitable pharmacokinetic and in vitro safety pharmacology profile. This project is currently in the late lead optimization stage.

B) In contrast to the PQS QS, the Csr/Rsm system is astonishingly widespread among pathogenic bacteria. Hence, this higher order regulatory system holds promise as a potential broad-spectrum pathoblocker target. We were able to identify identify natural product-derived small molecule-like hits as well as novel peptidic macrocyclic starting points for medicinal chemistry optimization. Demonstration of cellular activity mediated by blocking this post-transcriptional regulator is the next step in this project.

Targeting persistence of human Herpes Viruses

The latency-associated nuclear antigen (LANA) is required for latent replication and persistence of Kaposi’sarcoma-associated herpesvirus/human herpesvirus 8. LANA exerts important functions in the host cell like cell survival, transcriptional control, latent viral DNA replication, and stable episome segregation during mitosis. It acts via tethering the virus episome to the host chromatin. We aim to discover novel antiviral drugs, which to inhibit the interaction between LANA and the viral genome. By this means, we should be able to disrupt the latent replication of KSHV.

We were successful in finding the first LANA inhibitors by a fragment-based approach. The resulting optimized hit provides an ideal starting point for subsequent hit-to-lead campaigns providing evident target-binding, suitable ligand efficiencies, and favourable physicochemical properties. Further improved compounds are currently underway with a view to demonstrate antiviral activities in cell-based assays.

Further Information

A current overview of the team and further information about the research group can be found on the HIPS page.

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