Mikrobielle Interaktionen und Prozesse

Mikroorganismen leben in ihren natürlichen Lebensräumen in komplexen Gemeinschaften und auch der menschliche Körper ist ein solcher Lebensraum. Wir sind von Bakterien in solchen Mengen besiedelt, dass sie die Zahl der menschlichen Zellen weit übersteigt. Diese wirtsassoziierten Mikroorganismen können unsere Gesundheit fördern – oder ein Reservoir für Krankheitserreger sein.


  • Courtens,E.N.; Spieck,E.; Vilchez-Vargas,R.; Bode,S.; Boeckx,P.; Schouten,S.; Jauregui,R.; Pieper,D.H.; Vlaeminck,S.E.; Boon,N.; (2016). A robust nitrifying community in a bioreactor at 50 degrees C opens up the path for thermophilic nitrogen removal. 10 9, 2293-2303 PubMed
  • Yakimov,M.M.; Crisafi,F.; Messina,E.; Smedile,F.; Lopatina,A.; Denaro,R.; Pieper,D.H.; Golyshin,P.N.; Giuliano,L.; (2016). Analysis of defence systems and a conjugative IncP-1 plasmid in the marine polyaromatic hydrocarbons-degrading bacterium Cycloclasticus sp. 78-ME. 8 4, 508-519 DOI: 10.1111/1758-2229.12424 HZI-Repositorium PubMed
  • Milici,M.; Tomasch,J.; Wos-Oxley,M.L.; Decelle,J.; Jauregui,R.; Wang,H.; Deng,Z.L.; Plumeier,I.; Giebel,H.A.; Badewien,T.H.; Wurst,M.; Pieper,D.H.; Simon,M.; Wagner-Döbler,I.; (2016). Bacterioplankton Biogeography of the Atlantic Ocean: A Case Study of the Distance-Decay Relationship. 7, 590 DOI: 10.3389/fmicb.2016.00590 HZI-Repositorium PubMed
  • Verstraelen,H.; Vilchez-Vargas,R.; Desimpel,F.; Jauregui,R.; Vankeirsbilck,N.; Weyers,S.; Verhelst,R.; De,Sutter P.; Pieper,D.H.; Van de,Wiele T.; (2016). Characterisation of the human uterine microbiome in non-pregnant women through deep sequencing of the V1-2 region of the 16S rRNA gene. 4, e1602 DOI: 10.7717/peerj.1602 HZI-Repositorium PubMed
  • Milici,M.; Deng,Z.L.; Tomasch,J.; Decelle,J.; Wos-Oxley,M.L.; Wang,H.; Jauregui,R.; Plumeier,I.; Giebel,H.A.; Badewien,T.H.; Wurst,M.; Pieper,D.H.; Simon,M.; Wagner-Döbler,I.; (2016). Co-occurrence Analysis of Microbial Taxa in the Atlantic Ocean Reveals High Connectivity in the Free-Living Bacterioplankton. 7, 649 DOI: 10.3389/fmicb.2016.00649 HZI-Repositorium PubMed
  • Giuliani,C.; Marzorati,M.; Innocenti,M.; Vilchez-Vargas,R.; Vital,M.; Pieper,D.H.; Van de,Wiele T.; Mulinacci,N.; (2016). Dietary supplement based on stilbenes: a focus on gut microbial metabolism by the in vitro simulator M-SHIME(R). 7 11, 4564-4575 PubMed
  • Ehsani,E.; Barrantes,I.; Vandermaesen,J.; Geffers,R.; Jarek,M.; Boon,N.; Springael,D.; Pieper,D.H.; Vilchez-Vargas,R.; (2016). Draft Genome Sequence of Aeromonas sp. Strain EERV15. 4 4 DOI: 10.1128/genomeA.00811-16 HZI-Repositorium PubMed
  • Galvez,E.J.; Carrillo-Castro,K.; Zarate,L.; Guiza,L.; Pieper,D.H.; Garcia-Bonilla,E.; Salazar,M.; Junca,H.; (2016). Draft Genome Sequence of Bacillus licheniformis CG-B52, a Highly Virulent Bacterium of Pacific White Shrimp (Litopenaeus vannamei), Isolated from a Colombian Caribbean Aquaculture Outbreak. 4 3 DOI: 10.1128/genomeA.00321-16 HZI-Repositorium PubMed
  • Puente-Sanchez,F.; Pieper,D.H.; Arce-Rodriguez,A.; (2016). Draft Genome Sequence of the Deep-Subsurface Actinobacterium Tessaracoccus lapidicaptus IPBSL-7T. 4 5 DOI: 10.1128/genomeA.01078-16. PubMed
  • Korsch,M.; Marten,S.M.; Dötsch,A.; Jauregui,R.; Pieper,D.H.; Obst,U.; (2016). Effect of dental cements on peri-implant microbial community: comparison of the microbial communities inhabiting the peri-implant tissue when using different luting cements. 27 12, e161-e16609057161 DOI: Article WEBURLS
  • Courtens,E.N.P.; Vandekerckhove,T.; Prat,D.; Vilchez-Vargas,R.; Vital,M.; Pieper,D.H.; Meerbergen,K.; Lievens,B.; Boon,N.; Vlaeminck,S.E.; (2016). Empowering a mesophilic inoculum for thermophilic nitrification: Growth mode and temperature pattern as critical proliferation factors for archaeal ammonia oxidizers. 92, 94-10300431354 DOI: 10.1016/j.watres.2016.01.022 HZI-Repositorium PubMed
  • Wos-Oxley,M.L.; Chaves-Moreno,D.; Jauregui,R.; Oxley,A.P.; Kaspar,U.; Plumeier,I.; Kahl,S.; Rudack,C.; Becker,K.; Pieper,D.H.; (2016). Exploring the bacterial assemblages along the human nasal passage. Environmental Microbiology: 18 7, 2259-2271 DOI: 10.1111/1462-2920.13378 HZI-Repositorium PubMed
  • Chaves-Moreno,D.; Wos-Oxley,M.L.; Jauregui,R.; Medina,E.; Oxley,A.P.; Pieper,D.H.; (2016). Exploring the transcriptome of Staphylococcus aureus in its natural niche. 6, 33174 DOI: 10.1038/srep33174 HZI-Repositorium PubMed
  • Stallmach,A.; Lange,K.; Buening,J.; Sina,C.; Vital,M.; Pieper,D.H.; (2016). Fecal Microbiota Transfer in Patients With Chronic Antibiotic-Refractory Pouchitis. 111 3, 441-443 PubMed
  • Heidrich,B.; Steinmann,E.; Plumeier,I.; Kirschner,J.; Sollik,L.; Ziegert,S.; Engelmann,M.; Lehmann,P.; Manns,M.P.; Pieper,D.H.; Wedemeyer,H.; (2016). Frequent detection of HCV RNA and HCVcoreAg in stool of patients with chronic hepatitis C. 80, 1-713866532 DOI: 10.1016/j.jcv.2016.04.006 WEBURLS
  • Meerburg,F.A.; Vlaeminck,S.E.; Roume,H.; Seuntjens,D.; Pieper,D.H.; Jauregui,R.; Vilchez-Vargas,R.; Boon,N.; (2016). High-rate activated sludge communities have a distinctly different structure compared to low-rate sludge communities, and are less sensitive towards environmental and operational variables. 100, 137-145 DOI: 10.1016/j.watres.2016.04.076 HZI-Repositorium PubMed
  • Van,Herreweghen F.; Van den,Abbeele P.; De,Mulder T.; De,Weirdt R.; Geirnaert,A.; Hernandez-Sanabria,E.; Vilchez-Vargas,R.; Jauregui,R.; Pieper,D.H.; Belzer,C.; de Vos,W.M.; Van de,Wiele T.; (2016). In vitro colonisation of the distal colon by Akkermansia muciniphila is largely mucin and pH dependent., 1-16 PubMed
  • Lima-Morales,D.; Jauregui,R.; Camarinha-Silva,A.; Geffers,R.; Pieper,D.H.; Vilchez-Vargas,R.; (2016). Linking microbial community and catabolic gene structures during the adaptation of three contaminated soils under continuous long term pollutant stress. 82 7, 2227-2237 DOI: 10.1128/AEM.03482-15 HZI-Repositorium PubMed
  • Milici,M.; Tomasch,J.; Wos-Oxley,M.L.; Wang,H.; Jauregui,R.; Camarinha-Silva,A.; Deng,Z.L.; Plumeier,I.; Giebel,H.A.; Wurst,M.; Pieper,D.H.; Simon,M.; Wagner-Döbler,I.; (2016). Low diversity of planktonic bacteria in the tropical ocean. 6, 1-920452322 DOI: 10.1038/srep19054 HZI-Repositorium PubMed
  • Grunert,O.; Hernandez-Sanabria,E.; Vilchez-Vargas,R.; Jauregui,R.; Pieper,D.H.; Perneel,M.; Van Labeke,M.C.; Reheul,D.; Boon,N.; (2016). Mineral and organic growing media have distinct community structure, stability and functionality in soilless culture systems. 6, Article number 1883720452322 DOI: 10.1038/srep18837 HZI-Repositorium PubMed
  • Maes,S.; Props,R.; Fitts,J.P.; Smet,R.D.; Vilchez-Vargas,R.; Vital,M.; Pieper,D.H.; Vanhaecke,F.; Boon,N.; Hennebel,T.; (2016). Platinum Recovery from Synthetic Extreme Environments by Halophilic Bacteria. 50 5, 2619-2626 PubMed
  • De,Vrieze J.; Regueiro,L.; Props,R.; Vilchez-Vargas,R.; Jauregui,R.; Pieper,D.H.; Lema,J.M.; Carballa,M.; (2016). Presence does not imply activity: DNA and RNA patterns differ in response to salt perturbation in anaerobic digestion. 9, 244 PubMed
  • Coma,M.; Vilchez-Vargas,R.; Roume,H.; Jauregui,R.; Pieper,D.H.; Rabaey,K.; (2016). Product Diversity Linked to Substrate Usage in Chain Elongation by Mixed-Culture Fermentation. 50 12, 6467-64760013936X DOI: Article WEBURLS
  • Schulz,C.; Schutte,K.; Kropf,S.; Schmitt,F.C.; Vasapolli,R.; Kliegis,L.M.; Riegger,A.; Malfertheiner,P.; (2016). RiMINI - the influence of rifaximin on minimal hepatic encephalopathy (MHE) and on the intestinal microbiome in patients with liver cirrhosis: Study protocol for a randomized controlled trial. 17 1, 111 DOI: 10.1186/s13063-016-1205-8 HZI-Repositorium PubMed
  • Kaspar,U.; Kriegeskorte,A.; Schubert,T.; Peters,G.; Rudack,C.; Pieper,D.H.; Wos-Oxley,M.; Becker,K.; (2016). The culturome of the human nose habitats reveals individual bacterial fingerprint patterns. Environmental Microbiology: 18 7, 2130-214214622912 DOI: 10.1111/1462-2920.12891 HZI-Repositorium PubMed
  • De Vrieze,J.; Raport,L.; Roume,H.; Vilchez-Vargas,R.; Jáuregui,R.; Pieper,D.H.; Boon,N.; (2016). The full-scale anaerobic digestion microbiome is represented by specific marker populations. 104, 101-11000431354 DOI: Article WEBURLS
  • Lassek,C.; Burghartz,M.; Chaves-Moreno,D.; Otto,A.; Hentschker,C.; Fuchs,S.; Bernhardt,J.; Jauregui,R.; Neubauer,R.; Becher,D.; Pieper,D.H.; Jahn,M.; Jahn,D.; Riedel,K.; (2015). A metaproteomics approach to elucidate host and pathogen protein expression during catheter-associated urinary tract infections (CAUTIs). 14 4, 989-100815359476 WEBURLS
  • Vital,M.; Harkema,J.R.; Rizzo,M.; Tiedje,J.; Brandenberger,C.; (2015). Alterations of the Murine Gut Microbiome with Age and Allergic Airway Disease. 2015, 892568 DOI: 10.1155/2015/892568 HZI-Repositorium PubMed
  • Kümmel,S.; Herbst,F.A.; Bahr,A.; Duarte,M.; Pieper,D.H.; Jehmlich,N.; Seifert,J.; von Bergen,M.; Bombach,P.; Richnow,H.H.; Vogt,C.; (2015). Anaerobic naphthalene degradation by sulfatereducing Desulfobacteraceae from various anoxic aquifers. Fems Microbiology Ecology: 91 301686496 DOI: 10.1093/femsec/fiv006 HZI-Repositorium PubMed
  • Chaves-Moreno,D.; Wos-Oxley,M.L.; Jauregui,R.; Medina,E.; Oxley,A.P.; Pieper,D.H.; (2015). Application of a Novel "Pan-Genome"-Based Strategy for Assigning RNAseq Transcript Reads to Staphylococcus aureus Strains. PLoS ONE: 10 12, e0145861 DOI: 10.1371/journal.pone.0145861 HZI-Repositorium PubMed
  • Lopez-Fernandez,M.; Cherkouk,A.; Vilchez-Vargas,R.; Jauregui,R.; Pieper,D.; Boon,N.; Sanchez-Castro,I.; Merroun,M.L.; (2015). Bacterial Diversity in Bentonites, Engineered Barrier for Deep Geological Disposal of Radioactive Wastes. 70 4, 922-935 DOI: 10.1007/s00248-015-0630-7 HZI-Repositorium PubMed
  • Fiebig,A.; Loof,T.G.; Babbar,A.; Itzek,A.; Koehorst,J.J.; Schaap,P.J.; Nitsche-Schmitz,D.P.; (2015). Comparative Genomics of Streptococcus pyogenes M1 isolates differing in virulence and propensity to cause systemic infection in mice. International Journal of Medical Microbiology: 305 6, 532-54314384221 WEBURLS
  • Ben,Hania W.; Joseph,M.; Schumann,P.; Bunk,B.; Fiebig,A.; Sproer,C.; Klenk,H.P.; Fardeau,M.L.; Spring,S.; (2015). Complete genome sequence and description of Salinispira pacifica gen. nov., sp. nov., a novel spirochaete isolated form a hypersaline microbial mat. 10, 7 DOI: 10.1186/1944-3277-10-7 HZI-Repositorium PubMed
  • de Lima-Morales,D.; Chaves-Moreno,D.; Wos-Oxley,M.L.; Jauregui,R.; Vilchez-Vargas,R.; Pieper,D.H.; (2015). Degradation of benzene by Pseudomonas veronii 1YdBTEX2 and 1YB2 is catalyzed by enzymes encoded in distinct catabolic gene clusters. 82, 167-173 DOI: 10.1128/AEM.03026-15 HZI-Repositorium PubMed
  • Ehsani,E.; Jauregui,R.; Geffers,R.; Jareck,M.; Boon,N.; Pieper,D.H.; Vilchez-Vargas,R.; (2015). Draft Genome Sequence of Rhodococcus sp. Strain 311R. 3 3 DOI: 10.1128/genomeA.00378-15. HZI-Repositorium PubMed
  • Burbach,K.; Seifert,J.; Pieper,D.H.; Camarinha-Silva,A.; (2015). Evaluation of DNA extraction kits and phylogenetic diversity of the porcine gastrointestinal tract based on Illumina sequencing of two hypervariable regions. 5, 70-82 DOI: 10.1002/mbo3.312 HZI-Repositorium PubMed
  • Ehsani,E.; Jauregui,R.; Geffers,R.; Jarek,M.; Boon,N.; Pieper,D.H.; Vilchez-Vargas,R.; (2015). First Draft Genome Sequence of the Acidovorax caeni sp. nov. Type Strain R-24608 (DSM 19327). 3 6 PubMed
  • Lau,S.C.K.; Riedel,T.; Fiebig,A.; Han,J.; Huntemann,M.; Petersen,J.; Ivanova,N.N.; Markowitz,V.; Woyke,T.; Göker,M.; Kyrpides,N.C.; Klenk,H.P.; Qian,P.Y.; (2015). Genome sequence of the pink-pigmented marine bacterium Loktanella hongkongensis type strain (UST950701û009PT), a representative of the Roseobacter group. Standards in Genomic Sciences: 10 AUGUST201519443277 DOI: 10.1186/s40793-015-0050-9 HZI-Repositorium PubMed
  • Riedel,T.; Spring,S.; Fiebig,A.; Scheuner,C.; Petersen,J.; Goker,M.; Klenk,H.P.; (2015). Genome sequence of the Roseovarius mucosus type strain (DSM 17069(T)), a bacteriochlorophyll a-containing representative of the marine Roseobacter group isolated from the dinoflagellate Alexandrium ostenfeldii. 10, 17 DOI: 10.1186/1944-3277-10-17 HZI-Repositorium PubMed
  • Schulz,C.; Koch,N.; Schutte,K.; Pieper,D.H.; Malfertheiner,P.; (2015). H. pylori and its modulation of gastrointestinal microbiota. 16, 109-117 PubMed
  • Pérez-Pantoj,D.; Leiva-Novoa,P.; Donoso,R.A.; Little,C.; Godoy,M.; Pieper,D.H.; Gonzáleza,B.; (2015). Hierarchy of carbon source utilization in soil bacteria: Hegemonic preference for benzoate in complex aromatic compound mixtures degraded by Cupriavidus pinatubonensis strain JMP134. 81 12, 3914-392400992240 WEBURLS
  • Szafranski,S.P.; Wos-Oxley,M.L.; Vilchez-Vargas,R.; Jauregui,R.; Plumeier,I.; Klawonn,F.; Tomasch,J.; Meisinger,C.; Kühnisch,J.; Sztajer,H.; Pieper,D.H.; Wagner-Döbler,I.; (2015). High-resolution taxonomic profiling of the subgingival microbiome for biomarker discovery and periodontitis diagnosis. 81 3, 1047-105800992240 DOI: 10.1128/AEM.03534-14 HZI-Repositorium PubMed
  • Lunsmann,V.; Kappelmeyer,U.; Benndorf,R.; Martinez-Lavanchy,P.M.; Taubert,A.; Adrian,L.; Duarte,M.; Pieper,D.H.; von,Bergen M.; Muller,J.A.; Heipieper,H.J.; Jehmlich,N.; (2015). In-situ Protein-SIP highlights Burkholderiaceae as key players degrading toluene by para ring hydroxylation in a constructed wetland model. Environmental Microbiology: 18 4, 1176-1186 DOI: 10.1111/1462-2920.13133 PubMed
  • Martínez-Lavanchy,P.M.; Chen,Z.; Lünsmann,V.; Marin-Cevada,V.; Vilchez-Vargas,R.; Pieper,D.H.; Reiche,N.; Kappelmeyer,U.; Imparato,V.; Junca,H.; Nijenhuis,I.; Müller,J.A.; Kuschk,P.; Heipieper,H.J.; (2015). Microbial toluene removal in hypoxic model constructed wetlands occurs predominantly via the ring monooxygenation pathway. 81 18, 6241-625200992240 WEBURLS
  • Chaves-Moreno,D.; Plumeier,I.; Kahl,S.; Krismer,B.; Peschel,A.; Oxley,A.P.; Jauregui,R.; Pieper,D.H.; (2015). The microbial community structure of the cotton rat nose. 7, 929-935 PubMed
  • Liu,N.; Niu,G.; Xie,Z.; Chen,Z.; Itzek,A.; Kreth,J.; Gillaspy,A.; Zeng,L.; Burne,R.; Qi,F.; Merritt,J.; (2015). The Streptococcus mutans irvA Gene Encodes a trans-Acting Riboregulatory mRNA. 57 1, 179-19010972765 WEBURLS
  • Jimenez,D.J.; Chaves-Moreno,D.; van Elsas,J.D.; (2015). Unveiling the metabolic potential of two soil-derived microbial consortia selected on wheat straw. 5, 13845 DOI: 10.1038/srep13845 HZI-Repositorium PubMed
  • Duarte,Márcia; Jauregui,Ruy; Vilchez-Vargas,Ramiro; Junca,Howard*; Pieper,Dietmar H.; (2014). AromaDeg, a novel database for phylogenomics of aerobic bacterial degradation of aromatics. 2014 DOI: 10.1093/database/bau118 HZI-Repositorium PubMed
  • Camarinha-Silva,Amélia; Jauregui,Ruy; Chaves-Moreno,Diego; Oxley,Andrew P.A.; Schaumburg,F.; Becker,K.; Wos,Melissa L.*; Pieper,Dietmar H.; (2014). Comparing the anterior nare bacterial community of two discrete human populations using Illumina amplicon sequencing. Environmental Microbiology: 16 9, 2939-295214622912 DOI: 10.1111/1462-2920.12362 HZI-Repositorium PubMed
  • Xu,Y.; Itzek,A.; Kreth,J.; (2014). Comparison of genes required for H2O2 resistance in Streptococcus gordonii and Streptococcus sanguinis. Microbiology: 160, 2627-263813500872 WEBURLS
  • Jauregui,Ruy; Rodelas,B.; Geffers,Robert; Boon,N.; Pieper,Dietmar H.; Vilchez-Vargas,Ramiro; (2014). Draft Genome Sequence of the Naphthalene Degrader Herbaspirillum sp. Strain RV1423. Genome Announcement: 2 2 PubMed
  • Szafranska,A.K.; Oxley,A.P.A.; Chaves-Moreno,D.; Horst,S.A.; Roßlenbroich,S.; Peters,G.; Goldmann,O.; Rohd,M.; Sinha,B.; Pieper,D.H.; Löffler,B.; Jauregui,R.; Wos-Oxley,M.L.; Medina,E.; (2014). High-resolution transcriptomic analysis of the adaptive response of staphylococcus aureus during acute and chronic phases of osteomyelitis. MBio: 5 6, e0177521612129 DOI: 10.1128/mBio.01775-14 HZI-Repositorium PubMed
  • De,Vrieze J.; Gildemyn,S.; Vilchez-Vargas,R.; Jauregui,R.; Pieper,Dietmar H.; Verstraete,W.; Boon,N.; (2014). Inoculum selection is crucial to ensure operational stability in anaerobic digestion. Applied Microbiology and Biotechnology: 99, 189-199 PubMed
  • Mehraj,Jaishri; Akmatov,Manas K.; Strömpl,Julia; Gatzemeier,Anja; Layer,F.; Werner,G.; Pieper,Dietmar H.; Medina,Eva; Witte,W.; Pessler,Frank; Krause,Gerard; (2014). Methicillin-Sensitive and Methicillin-Resistant Staphylococcus aureus Nasal Carriage in a Random Sample of Non-Hospitalized Adult Population in Northern Germany. PLoS ONE: 9 9, e107937 DOI: 10.1371/journal.pone.0107937 HZI-Repositorium PubMed
  • Kerckhof,F.M.; Courtens,E.N.P.; Geirnaert,A.; Hoefman,S.; Ho,A.; Vilchez-Vargas,R.; Pieper,Dietmar H.; Jauregui,Ruy; Vlaeminck,S.E.; Van De Wiele,T.; Vandamme,P.; Heylen,K.; Boon,N.; (2014). Optimized cryopreservation of mixed microbial communities for conserved functionality and diversity. PLoS ONE: 9 6, e9951719326203 DOI: 10.1371/journal.pone.0099517 HZI-Repositorium PubMed
  • Gomez-Silvan,C.; Vilchez-Vargas,R.; Arevalo,J.; Gomez,M.A.; Gonzalez-Lopez,J.; Pieper,D.H.; Rodelas,B.; (2014). Quantitative response of nitrifying and denitrifying communities to environmental variables in a full-scale membrane bioreactor. 169, 126-133 PubMed
  • Courtens,E.N.; Vlaeminck,S.E.; Vilchez-Vargas,Ramiro; Verliefde,A.; Jauregui,Ruy; Pieper,Dietmar H.; Boon,N.; (2014). Trade-off between mesophilic and thermophilic denitrification: Rates vs. sludge production, settleability and stability. Water Research: 63C, 234-244 PubMed
  • Naveen,Kumar,V; van der,Linden M.; Menon,T.; Nitsche-Schmitz,D.Patric; (2014). Viridans and bovis group streptococci that cause infective endocarditis in two regions with contrasting epidemiology. International Journal of Medical Microbiology: 304 3-4, 262-268 PubMed
  • Vilchez-Vargas,Ramiro; Geffers,Robert; Suarez-Diez,Maria; Conte,Ianina; Waliczek,Agnes; Kaser,Vanessa S.; Kralova,M.; Junca,H.; Pieper,Dietmar H.; (2013). Analysis of the microbial gene landscape and transcriptome for aromatic pollutants and alkane degradation using a novel internally calibrated microarray system. Environmental Microbiology: 15 4, 1016-103914622912 DOI: 10.1126/scitranslmed.3009925 HZI-Repositorium PubMed
  • Schmidt,E.; Mandt,C.; Janssen,D.B.; Pieper,Dietmar H.*; Reineke,W.; (2013). Degradation of chloroaromatics: structure and catalytic activities of wild-type chlorocatechol 2,3-dioxygenases and modified ones. Environmental Microbiology: 15 1, 183-190 DOI: 10.1111/j.1462-2920.2012.02831.x PubMed
  • de Lima-Morales,Daiana; Chaves-Moreno,Diego; Jarek,Michael; Vilchez-Vargas,Ramiro; Jauregui,Ruy; Pieper,Dietmar H.; (2013). Draft Genome Sequence of Pseudomonas veronii Strain 1YdBTEX2. Genome Announcement: 1 3 DOI: 10.1128/genomeA.00258-13 HZI-Repositorium PubMed
  • Herbst,F.A.; Bahr,A.; Duarte,Márcia; Pieper,Dietmar H.; Richnow,H.H.; von Bergen,M.; Seifert,J.; Bombach,P.; (2013). Elucidation of in situ polycyclic aromatic hydrocarbon degradation by functional metaproteomics (protein-SIP). Proteomics: 13 18-19, 2910-292016159853 WEBURLS
  • de Lorenzo,V; Pieper,Dietmar*; Ramos,J.L.; (2013). From the test tube to the environment - and back. Environmental Microbiology: 15 1, 6-11 DOI: 10.1111/j.1462-2920.2012.02896.x HZI-Repositorium PubMed
  • Oosterkamp,M.J.; Veuskens,T.; Talarico Saia,F.; Weelink,S.A.B.; Goodwin,L.A.; Daligault,H.E.; Bruce,D.C.; Detter,J.C.; Tapia,R.; Han,C.S.; Land,M.L.; Hauser,L.J.; Langenhoff,A.A.M.; Gerritse,J.; van Berkel,W.J.H.; Pieper,Dietmar H.; Junca,H.; Smidt,H.; Schraa,G.; Davids,M.; Schaap,P.J.; Plugge,C.M.; Stams,A.J.M.; (2013). Genome Analysis and Physiological Comparison of Alicycliphilus denitrificans Strains BC and K601T. PLoS ONE: 8 6, e6697119326203 WEBURLS
  • Guazzaroni,M.E.; Herbst,F.A.; Lores,I.; Tamames,J.; Pelaez,A.I.; Lopez-Cortes,N.; Alcaide,M.; Del Pozo,M.V.; Vieites,J.M.; von,Bergen M.; Gallego,J.L.; Bargiela,R.; Lopez-Lopez,A.; Pieper,Dietmar H.*; Rossello-Mora,R.; Sanchez,J.; Seifert,J.; Ferrer,M.; (2013). Metaproteogenomic insights beyond bacterial response to naphthalene exposure and bio-stimulation. ISME Journal: 7 1, 122-136 DOI: 10.1038/ismej.2012.82 HZI-Repositorium PubMed
  • Alcaide,M.; Tornes,J.; Stogios,P.J.; Xu,X.; Gertler,C.; Di,Leo R.; Bargiela,R.; Lafraya,A.; Guazzaroni,M.E.; Lopez-Cortes,N.; Chernikova,T.N.; Golyshina,O.V.; Nechitaylo,T.Y.; Plumeier,Iris; Pieper,Dietmar H.; Yakimov,M.M.; Savchenko,A.; Golyshin,P.N.; Ferrer,M.; (2013). Single residues dictate the co-evolution of dual esterases: MCP hydrolases from the alpha/beta hydrolase family. Biochemical Journal: 454 1, 157-166 PubMed
  • Wos-Oxley,M.; Bleich,A.; Oxley,A.P.; Kahl,S.; Janus,L.; Smoczek,A.; Nahrstedt,H.; Pils,M.; Taudien,S.; Platzer,M.; Hedrich,H.J.; Medina,Eva*; Pieper,Dietmar*; (2012). Comparative evaluation of establishing a human gut microbial community within rodent models. Gut Microbes: 3 3 PubMed
  • Marin,M.; Plumeier,I.; Pieper,Dietmar H.*; (2012). Degradation of 2,3-dihydroxybenzoate by a novel meta-cleavage pathway. Journal of Bacteriology: 194 15, 3851-3860 DOI: 10.1128/JB.00430-12 HZI-Repositorium PubMed
  • Ferrer,M.; Ghazi,A.; Beloqui,A.; Vieites,J.M.; López-Cortés,N.; Marin-Navarro,J.; Nechitaylo,T.Y.; Guazzaroni,M.-E.; Polaina,J.; Waliczek,A.*; Chernikova,T.N.; Reva,O.N.; Golyshina,O.V.; Golyshin,P.N.; (2012). Functional metagenomics unveils a multifunctional glycosyl hydrolase from the family 43 catalysing the breakdown of plant polymers in the calf rumen. PLoS ONE: 7 6, e38134 DOI: 10.1371/journal.pone.0038134 HZI-Repositorium PubMed
  • Perez-Pantoja,D.; Donoso,R.; Agullo,L.; Cordova,M.; Seeger,M.; Pieper,Dietmar H.*; Gonzalez,B.; (2012). Genomic analysis of the potential for aromatic compounds biodegradation in Burkholderiales. Environmental Microbiology: 14 5, 1091-1117 DOI: 10.1111/j.1462-2920.2011.02613.x HZI-Repositorium PubMed
  • Del Pozo,M.V.; Fernandez-Arrojo,L.; Gil-Martinez,J.; Montesinos,A.; Chernikova,T.N.; Nechitaylo,T.Y.; Waliszek,A.*; Tortajada,M.; Rojas,A.; Huws,S.A.; Golyshina,O.V.; Newbold,C.J.; Polaina,J.; Ferrer,M.; Golyshin,P.N.; (2012). Microbial beta-glucosidases from cow rumen metagenome enhance the saccharification of lignocellulose in combination with commercial cellulase cocktail. Biotechnology for Biofuels: 5 1, 73 DOI: 10.1186/1754-6834-5-73 HZI-Repositorium PubMed
  • Buchler,G.; Wos-Oxley,M.L.; Smoczek,A.; Zschemisch,N.H.; Neumann,D.; Pieper,Dietmar H.*; Hedrich,H.J.; Bleich,A.; (2012). Strain-specific colitis susceptibility in IL10-deficient mice depends on complex gut microbiota-host interactions. Inflammatory Bowel Diseases: 18 5, 943-954 PubMed
  • Camarinha-Silva,A.; Jáuregui,R.; Pieper,Dietmar H.*; Wos-Oxley,M.L.; (2012). The temporal dynamics of bacterial communities across human anterior nares. Environmental Microbiology Reports: 4 1, 126-132
  • Camarinha-Silva,A.; Wos-Oxley,M.L.; Jauregui,R.; Becker,K.; Pieper,Dietmar H.; (2012). Validating T-RFLP as a sensitive and high-throughput approach to assess bacterial diversity patterns in human anterior nares. Fems Microbiology Ecology: 79 1, 98-108 PubMed
  • Vilchez,Ramiro*; Gomez-Silvan,C.; Purswani,J.; Gonzalez-Lopez,J.; Rodelas,B.; (2011). Characterization of bacterial communities exposed to Cr(III) and Pb(II) in submerged fixed-bed biofilms for groundwater treatment. Ecotoxicology: 20 4, 779-792 DOI: 10.1007/s10646-011-0629-x HZI-Repositorium PubMed
  • Oosterkamp,M.J.; Veuskens,T.; Plugge,C.M.; Langenhoff,A.A.; Gerritse,J.; van Berkel,W.J.; Pieper,Dietmar H.*; Junca,H.; Goodwin,L.A.; Daligault,H.E.; Bruce,D.C.; Detter,J.C.; Tapia,R.; Han,C.S.; Land,M.L.; Hauser,L.J.; Smidt,H.; Stams,A.J.; (2011). Genome sequences of Alicycliphilus denitrificans strains BC and K601T. Journal of Bacteriology: 193 18, 5028-5029 DOI: 10.1128/JB.00365-11 HZI-Repositorium PubMed
  • Masoudi-Nejad,A.; Movahedi,S.; Jauregui,R.*; (2011). Genome-scale computational analysis of DNA curvature and repeats in Arabidopsis and rice uncovers plant-specific genomic properties1. BMC GENOMICS: 12, 214 PubMed
  • Duarte,M.; Ferreira-da-Silva,F.; Lünsdorf,Heinrich*; Junca,H.; Gales,L.; Pieper,Dietmar H.*; Nunes,O.C.; (2011). Gulosibacter molinativorax ON4T molinate hydrolase, a novel cobalt-dependent amidohydrolase. Journal of Bacteriology: 193 20, 5810-5816 DOI: 10.1128/JB.05054-11 HZI-Repositorium PubMed
  • Pfingsten-Würzburg,S.; Pieper,Dietmar*; Bautsch,W.; Probst-Kepper,M.; (2011). Prevalence and molecular epidemiology of meticillin-resistant Staphylococcus aureus in nursing home residents in northern Germeny. Journal of Hospital Infection: 78 2, 108-112
  • Burkhart,J.L.; Müller,Rolf*; Kazmaier,U.; (2011). Synthesis and evaluation of simplified pretubulysin analogues. European Journal of Organic Chemistry: 2011 16, 3050-3059
  • Wos-Oxley,M.L.; Plumeier,I.; von,Eiff C.; Taudien,S.; Platzer,M.; Vilchez-Vargas,R.; Becker,K.; Pieper,Dietmar H.*; (2010). A poke into the diversity and associations within human anterior nare microbial communities. ISME Journal: 4 7, 839-851 PubMed
  • Gomes,N.C.; Flocco,C.G.; Costa,R.; Junca,H.; Vilchez,R.; Pieper,Dietmar H.*; Krogerrecklenfort,E.; Paranhos,R.; Mendonca-Hagler,L.C.; Smalla,K.; (2010). Mangrove microniches determine the structural and functional diversity of enriched petroleum hydrocarbon-degrading consortia. Fems Microbiology Ecology: 74 2, 276-290 PubMed
  • Vilchez-Vargas,R.; Junca,H.; Pieper,Dietmar H.*; (2010). Metabolic networks, microbial ecology and 'omics' technologies: towards understanding in situ biodegradation processes. Environental Microbiology: 12 12, 3089-3104 PubMed
  • Marin,M.; Perez-Pantoja,D.; Donoso,R.; Wray,Victor*; Gonzalez,B.; Pieper,Dietmar H.*; (2010). Modified 3-oxoadipate pathway for the biodegradation of methylaromatics in Pseudomonas reinekei MT1. Journal of Bacteriology: 192 6, 1543-1552 DOI: 10.1128/JB.01208-09 HZI-Repositorium PubMed
  • Perez-Pantoja,D.; Gonzalez,B.; Pieper,Dietmar H.*; (2009). Aerobic degradation of aromatic hydrocarbons.: Handbook of Hydrocarbon and Lipid Microbiology. Timmis,K.N.; (Ed.). Springer, 800-829
  • Pieper,Dietmar H.*; Gonzalez,B.; Camara,B.; Perez-Pantoja,D.; Reineke,W.; (2009). Aerobic degradation of chloroaromatics.: Handbook of Hydrocarbon and Lipid Microbiology. Timmis,K.N.; (Ed.). Springer, 840-859
  • Junca,H.; Pieper,Dietmar H.*; (2009). Functional marker gene assays for hydrocarbon degrading microbial communities - aerobic.: Handbook of Hydrocarbon and Lipid Microbiology. Timmis,K.N.; (Ed.). Springer, 4291-4305
  • Seeger,M.; Pieper,Dietmar H.*; (2009). Genetics of biphenyl biodegradation and co-metabolism of PCBs.: Handbook of Hydrocarbon and Lipid Microbiology. Timmis,K.N.; (Ed.). Springer, 1180-1194
  • Palleroni,N.; Pieper,Dietmar H.*; (2009). Microbiology of hydrocarbon-degrading Pseudomonas.: Handbook of Hydrocarbon and Lipid Microbiology. Timmis,K.N.; (Ed.). Springer, 1788-1796
  • Perez-Pantoja,D.; Gonzalez,B.; Pieper,Dietmar H.*; (2009). Phylogenomics of aerobic bacterial degradation of aromatics.: Handbook of Hydrocarbon and Lipid Microbiology. Timmis,K.N.; (Ed.). Springer, 1356-1391
  • Vílchez,R.; Pozo,C.; Gómez,M.A.; Rodelas,B.; Gonzáles-López,J.; (2007). Dominance of sphingomonads in a copper-exposed biofilm community for groundwater water treatment. Microbiology: 153 2, 325-33713500872 DOI: Article WEBURLS


  • Prof. Dr. Dietmar Pieper

    Dietmar Pieper

    Leiter der Arbeitsgruppe Molekulare Interaktionen und Prozesse

    0531 6181-4200



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Audio Podcast

  • Staphylococcus aureus – der Feind in meiner Nase
    Ein kräftiger Nieser und der Luftdruck katapultiert Millionen von Bakterien aus unserer Nase. Auch wenn wir keinen Schnupfen haben. Ein häufiger Nasenbewohner ist Staphylococcus aureus und wenn der mit dem Luftstoß zufällig auf eine Wunde trifft, haben wir ein Problem… Dietmar Pieper und sein Team wollen wissen, wer noch so alles in unserer Nase lebt – und was wir gegen unerwünschte Bewohner wie Staphylococcus aureus unternehmen können.