Publications of Workgroup
Authors: (Year: 2012). Title: A chemical proteomics approach to identify c-di-GMP binding proteins in Pseudomonas aeruginosa. Journal: Journal of Microbiological Methods: Volume: 88 Issue: 2, S-Page: 229-E-Page: 236
Authors: (Year: 2012). Title: A modified apriori algorithm for analysing high-dimensional gene data. Journal: LNCS: Volume: 6936, S-Page: 236-E-Page: 243
Authors: (Year: 2012). Title: A surfactant tolerant laccase of Meripilus giganteus. Journal: World Journal of Microbiology and Biotechnology: Volume: 28 Issue: 4, S-Page: 1623-E-Page: 1632
Authors: (Year: 2012). Title: An orphan sensor kinase controls quinolone signal production via MexT in Pseudomonas aeruginosa. Journal: Molecular Microbiology: Volume: 83 Issue: 3, S-Page: 536-E-Page: 547
Authors: (Year: 2012). Title: Identification of persulfide-binding and disulfide-forming cysteine residues in the NifS-like domain of the molybdenum cofactor sulfurase ABA3 by cysteine-scanning mutagenesis1. Journal: Biochemistry Journal: Volume: 441 Issue: 3, S-Page: 823-E-Page: 832
Authors: (Year: 2012). Title: Resistance phenotypes mediated by aminoacyl-phosphatidylglycerol synthases1. Journal: Journal of Bacteriology: Volume: 194 Issue: 6, S-Page: 1401-E-Page: 1416
Authors: (Year: 2012). Title: SignalNet: Visualization of signal network responses by quantitative proteome data. Journal: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics: Volume: 6936 LNCS, S-Page: 361-E-Page: 368
Authors: (Year: 2011). Title: Alanyl-phosphatidylglycerol synthase: mechanism of substrate recognition during tRNA-dependent lipid modification in Pseudomonas aeruginosa. Journal: Molecular Microbiology: Volume: 80 Issue: 4, S-Page: 935-E-Page: 950
Authors: (Year: 2011). Title: An alternative to ROC and AUC analysis of classifiers. Journal: LNCS (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)): Volume: 7014, S-Page: 210-E-Page: 221
Authors: (Year: 2011). Title: Biosynthesis of the repeating units of the exopolysaccarides amylovoran from Erwinia amylovora and stewartan from Pantoea stewartii. Journal: Physiological and Molecular Plant Pathology: Volume: 75 Issue: 4, S-Page: 163-E-Page: 169 HZI repository
Authors: (Year: 2011). Title: Characterization of a hydrophobin of the ascomycete Paecilomyces farinosus. Journal: Journal of Basic Microbiology: Volume: 51 Issue: 4, S-Page: 404-E-Page: 414
Authors: (Year: 2011). Title: Cluster validity measures based on the minimum description length principle. Journal: Lecture Notes in Computer Science: Volume: 6881 LNAI (part 1), S-Page: 82-E-Page: 89
Authors: (Year: 2011). Title: Complete genome sequence of the animal pathogen Listeria ivanovii, which provides insights into host specificities and evolution of the genus Listeria1. Journal: Journal of Bacteriology: Volume: 193 Issue: 23, S-Page: 6787-E-Page: 6788
Authors: (Year: 2011). Title: Diagnosis of subclinical and clinical acute T-cell-mediated rejection in renal transplant patients by urinary proteome analysis. Journal: Proteomics -Clinical Applications: Volume: 5 Issue: 5-6, S-Page: 322-E-Page: 333
Authors: (Year: 2011). Title: Elucidation of the Dual Role of Mycobacterial MoeZR in Molybdenum Cofactor Biosynthesis and Cysteine Biosynthesis. Journal: PLoS ONE: Volume: 6 Issue: 11, S-Page: e28170
Authors: (Year: 2011). Title: Evaluation of glyceraldehyde-3-phosphate, genes as reference mRNAs in urate crystal. Journal: BMC Research Notes: Volume: 4, S-Page: 443 HZI repository
Authors: (Year: 2011). Title: Fuzzy clustering with polynomial fuzzifier function in connection with m-estimators. Journal: Applied and Computational Mathematics: Volume: 10 Issue: 1, S-Page: 146-E-Page: 163
Authors: (Year: 2011). Title: GeneReporter--sequence-based document retrieval and annotation. Journal: Bioinformatics: Volume: 27 Issue: 7, S-Page: 1034-E-Page: 1035
Authors: (Year: 2011). Title: Heterologous expression, refolding and characterization of a salt activated subtilase from Pleurotus ostreatus. Journal: Process Biochemistry: Volume: 46 Issue: 9, S-Page: 1840-E-Page: 1846
Authors: (Year: 2011). Title: High-resolution mass spectrometric analysis of the secretome from mouse lung endothelial progenitor cells. Journal: Angiogenesis: Volume: 14 Issue: 2, S-Page: 163-E-Page: 172 HZI repository PubMed
Authors: (Year: 2011). Title: Identification of nuclear magnetic resonance signals via Gaussian mixture decomposition. Journal: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics): Volume: 7014 LNCS, S-Page: 234-E-Page: 245
Authors: (Year: 2011). Title: Identification of peptides with deviating regulation factors using a robust clustering scheme. Journal: Advances in Intelligent and Soft Computing: Volume: 93, S-Page: 263-E-Page: 270
Authors: (Year: 2011). Title: Plastid gene expression and plant development require a plastidic protein of the mitochondrial transcription termination factor family. Journal: Proceedings of the National Academy of Sciences USA: Volume: 108 Issue: 16, S-Page: 6674-E-Page: 6679 HZI repository PubMed
Authors: (Year: 2011). Title: PsoP1, a Milk-Clotting Aspartic Peptidase from the Basidiomycete Fungus Piptoporus soloniensis. Journal: Journal of Agricultural and Food Chemistry: Volume: 59 Issue: 18, S-Page: 10311-E-Page: 10316
Authors: (Year: 2011). Title: Rank correlation coefficient correction by removing worst cases.: Book Title: Information Processing and Management of Uncertainty in Knowledge-Based Systems: Theory and Methods. Editors: City: Berlin : Publisher: Springer, S-Page: 356-E-Page: 364
Authors: (Year: 2011). Title: Saliva proteins of vector culicoides modify structure and infectivity of bluetongue virus particles. Journal: PLoS ONE: Volume: 6 Issue: 3, S-Page: e17545 HZI repository PubMed
Authors: (Year: 2011). Title: The extracellular aspartic peptidase of basidiomycete Wolfiporia cocos is a highly efficient milk clotting enzyme. Journal: Milchwissenschaft: Volume: 66 Issue: 4, S-Page: 406-E-Page: 409
Authors: (Year: 2011). Title: The Identification of a Novel Protein Involved in Molybdenum Cofactor Biosynthesis in Escherichia coli. Journal: Journal of Biological Chemistry: Volume: 286 Issue: 41, S-Page: 35801-E-Page: 35812
Authors: (Year: 2011). Title: The luxS mutation causes loosely-bound biofilms in Shewanella oneidensis. Journal: BMC Research Notes: Volume: 4, S-Page: 180
Authors: (Year: 2010). Title: Anaerobic adaptation in Pseudomonas aeruginosa : definition of the Anr and Dnr regulons. Journal: Environmental Microbiology: Volume: 12 Issue: 6, S-Page: 1719-E-Page: 1733
Authors: (Year: 2010). Title: AVEDA: Statistical tests for finding interesting visulatisations. Journal: 5711 LNAI (Part 1): Volume: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics, S-Page: 235-E-Page: 242
Authors: (Year: 2010). Title: Columnar liquid crystals derived from crown ethers with two lateral ester-substituted ortho-terphenyl units: Unexpected destabilisation of the mesophase by potassium iodide. Journal: Liquid Crystals: Volume: 37 Issue: 9, S-Page: 1139-E-Page: 1149
Authors: (Year: 2010). Title: Comprehensive human urine standards for comparability and standardization in clinical proteome analysis. Journal: Proteomics - Clinical Applications: Volume: 4 Issue: 4, S-Page: 464-E-Page: 478
Authors: (Year: 2010). Title: Evaluation of Madurahydroxylactone as a Slow Release Antibacterial Implant Coating. Journal: Open Biomedical Engineering Journal: Volume: 4, S-Page: 263-E-Page: 270
Authors: (Year: 2010). Title: Global genotype-phenotype correlations in Pseudomonas aeruginosa. Journal: PLoS Pathogens: Volume: 6 Issue: 8, S-Page: 89-E-Page: 90 HZI repository PubMed
Authors: (Year: 2010). Title: History-dependent catastrophes regulate axonal microtubule behavior. Journal: Current biology: Volume: 20 Issue: 11, S-Page: 1023-E-Page: 1028
Authors: (Year: 2010). Title: Incremental quantile estimation. Journal: Evolving Systems: Volume: 1 Issue: 4, S-Page: 253-E-Page: 264
Authors: (Year: 2010). Title: Internal architecture of mitochondrial complex I from Arabidopsis thaliana. Journal: Plant Cell: Volume: 22 Issue: 3, S-Page: 797-E-Page: 810
Authors: (Year: 2010). Title: Over-expression of PR-10a leads to increased salt and osmotic tolerance in potato cell cultures. Journal: Journal of Biotechnology: Volume: 150 Issue: 3, S-Page: 277-E-Page: 287
Authors: (Year: 2010). Title: The first characterized asparaginase from a basidiomycete, Flammulina velutipes. Journal: Bioresource Technology: Volume: 102 Issue: 3, S-Page: 3316-E-Page: 3321
Authors: (Year: 2010). Title: The intra- and extracellular proteome of Aspergillus niger growing on defined medium with xylose or maltose as carbon substrate. Journal: Microbial Cell Factories: Volume: 9 Issue: 23, S-Page: 1-E-Page: 13 HZI repository PubMed
Authors: (Year: 2010). Title: The need for benchmarks with data from stochastic processes and meta-models in evolving systems.: Book Title: Proceedings of the International Symposium on Evolving Intelligent Systems. Editors: City: Leicester : Publisher: SSAISB, S-Page: 30-E-Page: 33
Authors: (Year: 2010). Title: Urinary collagen fragments are significantly altered in diabetes: a link to pathophysiology. Journal: PLoS ONE: Volume: 5 Issue: 9 HZI repository PubMed
Authors: (Year: 2009). Title: Compensation of translational displacement in time series clustering using cross correlation. Journal: Lecture Notes in Computer Science: Volume: (57772 LCNS), S-Page: 71-E-Page: 82
Authors: (Year: 2009). Title: Genomewide identification of genetic determinants of antimicrobial drug resistance in Pseudomonas aeruginosa. Journal: Antimicrobial Agents and Chemotherapy: Volume: 53 Issue: 6, S-Page: 2522-E-Page: 2531 HZI repository PubMed
Authors: (Year: 2009). Title: Heterologous expression of an extra-cellular lipase from the basidiomycete Pleurotus sapidus. Journal: Journal of Molecular Catalysis B: Enzymatic: Volume: 57, S-Page: 16-E-Page: 21
Authors: (Year: 2009). Title: IRSp53 links the enterohemorrhagic E. coli effectors Tir and EspFU for actin pedestal formation. Journal: Cell Host and Microbe: Volume: 5 Issue: 3, S-Page: 244-E-Page: 258
Authors: (Year: 2009). Title: MS-specific noise model reveals the potential of iTRAQ in quantitative proteomics. Journal: Bioinformatics: Volume: 25 Issue: 8, S-Page: 1004-E-Page: 1011 HZI repository PubMed
Authors: (Year: 2009). Title: Quantitative phosphokinome analysis of the met pathway activated by the invasin internalin B from Listeria monocytogenes. Journal: Molecular and Cellular Proteomics: Volume: 8 Issue: 12, S-Page: 2778-E-Page: 2795
Authors: (Year: 2008). Title: A structural investigation of complex I and I+III(2) supercomplex from Zea mays at 11-13 A resolution: Assignment of the carbonic anhydrase domain and evidence for structural heterogeneity within complex I. Journal: Biochimica et biophysica acta: Volume: 1777 Issue: 1, S-Page: 84-E-Page: 93 HZI repository PubMed
Authors: (Year: 2008). Title: Clustering likelihood curves: Finding deviations from single clusters.: Book Title: Hybrid Artificial Intelligence Systems. Editors: City: Berlin Heidelberg : Publisher: Springer Verlag, S-Page: 385-E-Page: 391
Authors: (Year: 2008). Title: Lipoproteins of Listeria monocytogenes are critical for virulence and TLR2-mediated immune activation. Journal: Journal of Immunology: Volume: 181 Issue: 3, S-Page: 2028-E-Page: 2035
Authors: (Year: 2008). Title: Nitrate-responsive NarX-NarL represses arginine-mediated induction of the Pseudomonas aeruginosa arginine fermentation arcDABC operon1. Journal: Microbiology: Volume: 154 Issue: Pt 10, S-Page: 3053-E-Page: 3060
Authors: (Year: 2008). Title: ProdoNet: identification and visualization of prokaryotic gene regulatory and metabolic networks. Journal: Nucleic Acids Research: Volume: 36 Issue: Web Server issue, S-Page: W460-E-Page: W464
Authors: (Year: 2008). Title: Quantitative gel electrophoresis: sources of variation. Journal: Journal of Proteome Research: Volume: 7 Issue: 3, S-Page: 1226-E-Page: 1234
Authors: (Year: 2008). Title: Structure of xylogalacturonan fragments from watermelon cell-wall pectin. Endopolygalacturonase can accommodate a xylosyl residue on the galacturonic acid just following the hydrolysis site. Journal: Carbohydrate Research: Volume: 343 Issue: 7, S-Page: 1212-E-Page: 1221
Authors: (Year: 2007). Title: A sucrose-inducible promoter system for the intra- and extracellular protein production in Bacillus megaterium. Journal: Journal of Biotechnology: Volume: 132 Issue: 4, S-Page: 426-E-Page: 430 Full text HZI repository
Authors: (Year: 2007). Title: Inactivation of Lgt allows systematic characterization of lipoproteins from Listeria monocytogenes. Journal: Journal of Bacteriology: Volume: 189 Issue: 2, S-Page: 313-E-Page: 324 HZI repository PubMed
Authors: (Year: 2007). Title: Pathogenomics of Listeria spp.. Journal: International Journal of Medical Microbiology: Volume: 297 Issue: 7-8, S-Page: 541-E-Page: 557
Authors: (Year: 2007). Title: Proteomic analysis of the U1 snRNP of Schizosaccharomyces pombe reveals three essential organism-specific proteins. Journal: Nucleic Acids Research: Volume: 35 Issue: 5, S-Page: 1391-E-Page: 1401
Authors: (Year: 2007). Title: Proteomics analysis of protein kinases by target class-selective pre-fractionation and tandem mass spectrometry. Journal: Molecular & Cellular Proteomics: Volume: 6 Issue: 3, S-Page: 537-E-Page: 547 HZI repository PubMed
Authors: (Year: 2006). Title: Anaerobic survival of Pseudomonas aeruginosa by pyruvate fermentation requires an Usp-type stress protein. Journal: Journal of Bacteriology: Volume: 188, S-Page: 659-E-Page: 668 HZI repository PubMed
Authors: (Year: 2006). Title: Carbonic anhydrase subunits form a matrix-exposed domain attached to the membrane arm of mitochondrial complex I in plants. Journal: Journal of Biological Chemistry: Volume: 281 Issue: 10, S-Page: 6482-E-Page: 6488 HZI repository PubMed
Authors: (Year: 2006). Title: Characterization of the Drosophila Lipid Droplet Subproteome. Journal: Molecular & Cellular Proteomics: Volume: 5, S-Page: 1082-E-Page: 1094 HZI repository PubMed
Authors: (Year: 2006). Title: Direct mass spectrometric peptide profiling and fragmentation of larval peptide hormone release sites in Drosophila melanogaster reveals tagma-specific peptide expression and differential processing. Journal: Journal of Neurochemistry: Volume: 96 Issue: 5, S-Page: 1362-E-Page: 1374
Authors: (Year: 2006). Title: Elucidation of mechanisms of acid stress in Listeria monocytogenes by proteomic analysis.: Book Title: Microbial Proteomics - Functional Biology of Whole Organisms. Editors: City: Hoboken, New Jersey : Publisher: John Wiley & Sons, S-Page: 75-E-Page: 88
Authors: (Year: 2006). Title: LEGER: knowledge database and visualization tool for comparative genomics of pathogenic and non-pathogenic Listeria species. Journal: Nucleic Acids Research: Volume: 34, S-Page: D402-E-Page: D406
Authors: (Year: 2006). Title: Quantitative analysis of receptor tyrosine kinase signaling exploited by Listeria monocytogenes. Journal: Molecular & Cellular Proteomics: Volume: 5 Issue: 10, S-Page: S168-E-Page: S168 654 Suppl.
Authors: (Year: 2006). Title: Quorum-sensing antagonistic activities of azithromycin in Pseudomonas aeruginosa PAO1: a global approach. Journal: Antimicrobial Agents and Chemotherapy: Volume: 50, S-Page: 1680-E-Page: 1688 HZI repository PubMed
Authors: (Year: 2006). Title: The cell wall subproteome of Listeria monocytogenes.: Book Title: Proteomics of Microbial Pathogens. Editors: City: Weinheim : Publisher: Wiley-VCH, S-Page: 153-E-Page: 177
Authors: (Year: 2006). Title: The MprF protein is required for lysinylation of phospholipids in listerial membranes and confers resistance to cationic antimicrobial peptides (CAMPs) on Lysteria monocytogenes. Journal: Molecular Microbiology: Volume: 62, S-Page: 1325-E-Page: 1339 HZI repository PubMed
Authors: (Year: 2006). Title: The Pseudomonas aeruginosa universal stress protein PA4352 is essential for surviving anaerobic energy stress. Journal: Journal of Bacteriology: Volume: 188 Issue: 18, S-Page: 6529-E-Page: 6538
Authors: (Year: 2006). Title: The substrate radical of Escherichia coli oxygen-independent coproporphyrinogen III oxidase HemN. Journal: Journal of Biological Chemistry: Volume: 281, S-Page: 15727-E-Page: 15734
Authors: (Year: 2006). Title: VIS-O-BAC: exploratory visualization of functional genome studies from bacteria. Journal: Bioinformatics: Volume: 22 Issue: 5, S-Page: 630-E-Page: 631
Authors: (Year: 2005). Title: Comparative proteome analysis of secretory proteins from pathogenic and non-pathogenic Listeria species. Journal: Proteomics: Volume: 5, S-Page: 1544-E-Page: 1557
Authors: (Year: 2005). Title: Enzymes involved in anaerobic respiration appear to play a role in Actinobacillus pleuropneumoniae virulence. Journal: Infection and Immunity: Volume: 73 Issue: 1, S-Page: 226-E-Page: 234 HZI repository PubMed
Authors: (Year: 2005). Title: MineBlast: A literature presentation service supporting protein annotation by data Mining of blast results. Journal: Bioinformatics: Volume: 21, S-Page: 3450-E-Page: 3451
Authors: (Year: 2005). Title: Proteomic characterization of the angiogenesis inhibitor SU6668 reveals multiple impacts on cellular kinase signaling. Journal: Cancer Research: Volume: 65 Issue: 15, S-Page: 6919-E-Page: 6926
Authors: (Year: 2004). Title: Mitochondrial cytochrome c oxidase and succinate dehydrogenase complexes contain plant specific subunits. Journal: Plant Molecular Biology: Volume: 56 Issue: 1, S-Page: 77-E-Page: 90
Authors: (Year: 2004). Title: Systematic identification of covalently-bound cell wall proteins and analysis of protein-polysaccharide linkages of the human pathogen Candida glabrata. Journal: Microbiology: Volume: 150, S-Page: 3129-E-Page: 3144

